KEGG   Physcomitrium patens (spreading earthmoss): 112277400
Entry
112277400         CDS       T01041                                 
Name
(RefSeq) phosphomethylpyrimidine synthase, chloroplastic isoform X1
  KO
K03147  phosphomethylpyrimidine synthase [EC:4.1.99.17]
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp00730  Thiamine metabolism
ppp01100  Metabolic pathways
ppp01240  Biosynthesis of cofactors
Module
ppp_M00897  Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00730 Thiamine metabolism
    112277400
Enzymes [BR:ppp01000]
 4. Lyases
  4.1  Carbon-carbon lyases
   4.1.99  Other carbon-carbon lyases
    4.1.99.17  phosphomethylpyrimidine synthase
     112277400
SSDB
Motif
Pfam: ThiC_Rad_SAM ThiC-associated
Other DBs
NCBI-GeneID: 112277400
NCBI-ProteinID: XP_024365389
Position
25:3753950..3757851
AA seq 666 aa
MATAMMGTAKAAAVVAHGAVLERVRKSSGSAQLLASSKSSLRKGTTSEVMHQGSCVERSS
RNVSMKVTMTAILPRPSSSASGVGRTRPTSDPAAPDFKPIPAFEECFPNSTKETIEVVHS
TTGSVLQVPFRRIHLSGDDPHFDTYDTSGPQNVNPRDGLPKIRKEWIARREARKDERFTQ
MYYAKKGIITEEMVFCAAREKMDPEYVRTEVARGRAIIPSNKKHLELEPMIVGRKFLVKV
NANIGNSAVTSSIEEEVQKLQWATMWGADTIMDLSTGLHIHETREWIMRNSSVPVGTVPI
YQALEKVNGIAEDLTWEVFRETLIEQAEQGVDYFTIHAGVLLRFIPMTARRMTGIVSRGG
SIHAKWCLAHHKENFAYTHWDDILDICNQYDIALSIGDGLRPGSIYDANDMAQFSELATQ
GELTRRAWEKDVQVMNEGPGHIPLHKIPENMEKQLDWCNEAPFYTLGPLTTDIAPGYDHI
TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVIAYKIAAHAADLAKRHPLAQNW
DDALSKARFEFRWRDQFALSLDPVTALSFHDETLPAEGAKVAHFCSMCGPKFCSMSITED
VRKYAEEHGYGDEAEAAMKDGMEKMSQEFLAAKKTISGEQWGESGGEIYLPESYVASKIS
STTPLS
NT seq 2001 nt   +upstreamnt  +downstreamnt
atggctacggctatgatgggtactgcgaaggcggctgctgttgttgcccatggggctgta
ttggagagggtccggaagtcctctggttccgcgcagctgctggcttcgtcgaagtcgagc
ttaaggaaggggacgacgagcgaggtgatgcaccagggttcctgcgtcgaacgcagctct
cgaaatgtctcaatgaaggttaccatgacggccatcctccctcgaccttcgtcttctgct
agtggagttggccgtacgcgccccaccagcgaccctgccgctcctgattttaagccgatt
cctgctttcgaagaatgcttccccaacagcaccaaggagaccatagaagtggtgcacagc
actacagggtctgtgctccaggtgccattccgcagaattcacttgtctggagacgaccca
catttcgacacctacgacacgagtggacctcagaacgtcaatcctcgtgacggtcttccg
aagattcggaaggagtggatcgcgaggagggaagcgcgcaaagatgaaaggttcacacaa
atgtactacgcgaagaagggaattatcacggaggagatggtgttctgcgcagcgcgtgag
aagatggaccccgagtatgtgaggactgaagtagctcgtgggcgcgccatcatcccctcc
aacaagaagcatctcgagctggagccaatgatcgttgggcgtaagtttctcgtgaaggtg
aatgccaatattggtaattccgctgtgacgagttcaatcgaagaggaggtgcagaagctt
caatgggccacaatgtggggcgccgacaccatcatggacctctccacaggtcttcacatt
cacgaaactcgtgaatggatcatgcgaaactcgtcagtgcctgtgggaactgtaccaatc
taccaagcgctggagaaagtgaacggaattgccgaagatttgacgtgggaggtgttcagg
gagactcttatcgagcaggccgagcaaggggtggattacttcaccatccatgctggtgtt
ttgctgaggttcatccccatgacagcccggcgtatgacgggcattgtctcaaggggtggc
tccattcacgccaagtggtgcctggcgcaccacaaggagaatttcgcttacacccattgg
gatgatatattggacatctgcaaccagtatgatatcgcgctctctattggagatggcctc
cggcctggttccatttacgatgcaaacgacatggcgcagttttcagagctcgctactcaa
ggtgagcttacacggcgagcgtgggagaaggacgttcaggtgatgaatgaaggacctggc
cacattccactccacaaaatcccagagaatatggagaagcagctggattggtgtaacgaa
gctcctttctacactcttggccctctcacaacagatatcgctcctggatatgaccacatc
acatctgcaatcggcgcagcaaacattggagctttgggaactgctttgctctgctacgtg
acgccgaaagaacatctcggactcccaaaccgtgatgatgtcaaaaccggtgtaattgcg
tacaagattgctgcgcacgccgcagatctcgcgaagagacatcctcttgcgcagaattgg
gacgacgctctcagcaaggctcgatttgagttccgctggagggatcaatttgcattatct
ctggaccccgtgactgcactctcattccacgacgagactcttccagctgagggtgcgaaa
gtggcgcatttttgctccatgtgcggccccaagttttgttctatgagcatcaccgaggac
gtgcgcaagtatgccgaagagcatggatatggtgatgaagctgaagctgcgatgaaggat
ggcatggaaaaaatgagtcaagaattcttagctgctaagaagaccatcagtggagaacag
tggggtgaaagcgggggtgaaatctacttgcccgagagctacgttgcgtcaaaaatctca
tcaaccacaccattatcataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (7)   
   KEGG PATHWAY (3)   
   KEGG MODULE (4)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (31)   

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