KEGG   Physcomitrium patens (spreading earthmoss): 112282446
Entry
112282446         CDS       T01041                                 
Name
(RefSeq) cyclin-H1-1-like
  KO
K06634  cyclin H
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03022  Basal transcription factors
ppp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    112282446
  09124 Replication and repair
   03420 Nucleotide excision repair
    112282446
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppp03021]
    112282446
   03400 DNA repair and recombination proteins [BR:ppp03400]
    112282446
Transcription machinery [BR:ppp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     112282446
DNA repair and recombination proteins [BR:ppp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     112282446
SSDB
Motif
Pfam: Cyclin_C_2 Cyclin_N TFIIB RB_B DnaGprimase_HBD DUF1664
Other DBs
NCBI-GeneID: 112282446
NCBI-ProteinID: XP_024375797
Position
5:7628965..7634265
AA seq 356 aa
MADFTTSTHRKRWILNPHDLTRKYQAANQRAVDALHKYGATRVEVQPDGSLTYPGAGGDG
ENGRKGPLPEHLSVEEELLVRRFYENKIQQVCAAFRLPYKIQATAIMYFKRFYQQWSVME
HDPKNIMLTCIYLACKVEESHVSAEELGKGIQQDPQVVLKNEMIVLQGLEFELIVYTPYR
SMEGFIYDMEPFVQRMGSAGLEALQELRAVAGRVVDNMMLTDAPLLYPPGQLALAALRIA
NQEPKVDLDGYLQALPEHKSLQQSYAELIAKLDAIQFLVKGTKQPVEAEVRHIDRKLKYC
RNPSLQDEAKSKRERKIKRGKRPPSDVSMTNAVDEPLDLNVAHDAKRRQSDGDALI
NT seq 1071 nt   +upstreamnt  +downstreamnt
atggctgacttcacgacgtccacgcatcggaagcggtggatccttaatccccatgatctg
accagaaagtatcaagccgcgaatcaaagggcggtggacgctctgcacaagtatggcgca
actagagtggaagtacaaccggatgggagcctgacctaccctggtgctggtggagatgga
gaaaatggaaggaaagggcccttaccagagcatttatcagttgaagaggagctccttgtt
cgaagattctacgagaataaaattcagcaagtttgtgcagcttttagacttccttacaaa
attcaggcaacagctataatgtattttaagagattttaccaacaatggtctgtcatggag
cacgaccccaaaaatattatgctcacatgtatatatctggcatgtaaagtagaggagtcc
catgtttctgccgaagaattgggaaagggtatccagcaagatcctcaagtggttctcaag
aatgagatgattgtattacaaggtctagagtttgagctcattgtttatactccttatcgt
tctatggagggcttcatctatgatatggagcctttcgtgcaacgaatgggttccgctggc
ttggaagcattgcaggagttacgagcagtagctggacgtgttgtggacaatatgatgctt
acagatgcacctctactgtatcctcctggccagttagcgttggctgcgcttcggattgcc
aatcaagagcctaaggtggatttagacggatatcttcaagctctcccagaacataaaagt
ctgcagcaatcatacgctgaattgattgctaagcttgatgctattcagtttctggtcaag
gggactaaacagcccgtagaagcagaagtgaggcacatcgaccgcaagcttaaatattgt
agaaatccaagcttacaagatgaggcaaagagcaaacgcgagcgcaagatcaagagaggc
aaacgaccgcctagtgatgtttcaatgacaaatgccgtggatgaacctctagatcttaat
gtggctcatgatgctaaaagaaggcaaagcgacggagatgcgttaatatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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