KEGG   Physcomitrium patens (spreading earthmoss): 112283671
Entry
112283671         CDS       T01041                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112283671
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppp03019]
    112283671
Enzymes [BR:ppp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     112283671
Messenger RNA biogenesis [BR:ppp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     112283671
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 112283671
NCBI-ProteinID: XP_024378489
Position
6:complement(950453..954080)
AA seq 807 aa
MRLRPWTRPCLATRPQLVLPRLSRLGILDLQSSMPGDLVPCRGVGGVSGAAGSGTPGERY
VGGFWRDERACGIVGDERSRLNICSLNATKEQVRGVSGKTGGGGGTRGGEIGGMGAAGLI
SMANVTRRNFVESLEQLRGQLAGADFVAVDLEMTGVESTKWRRNLELDSYETRYQNLKHS
AEKFAVWQCGVCPFKWDEAHNKWVAYPYNFFIFPRNELQLELPARSFFAQTTSLEFLTKH
RFDFNACIYDGISYLSHEQEAVARVLMGSVSVKQNFPSGVHNSSEIPLTKPGDVAFVEKI
RTQIGRWRDELLFNRQKWQVVNEKLITTSTLVQPPPYSPLVPLPTSDIGNDSVTIKQDID
VGPSLGSLRPSLNIDVTSHYQSRLVQQIIKTHFPDLVAAVNARGNGPHDRIRIRVIYVSP
KEDMSKVIQELADEERNALETRVSNAVGFRKVLDAIAEAGLPVVGHNCILDMTHIYSKFV
GPLPATSAEFSSSLRQQFPCVIDTKYLLRAEPTLRGILASRSTSLAVVFTHICQVFADKA
VASGRFYFGKGKILNNAFTKVAVEVAEEFQRYGGTKDTGLKHEAGFDAYMTGSVFAQACH
LLHVDAATIRKIPDAVKVGEQGFASYANLLALGWVGNMVLDLTTGKEATGVKALRGPTSS
ADRHPEHSTVALVWGFPSGSNEFEIRLIVQRVFNAERKFPPADITIIDESSAFVHFRDSR
HMHQFLRLMQGPRISDAIPTSFRAAPYQAYEVLCRSPLTTERLVDSANILLLDRFYLQQT
PADTLVSDISSVKVLEEIGYAEVGHNH
NT seq 2424 nt   +upstreamnt  +downstreamnt
atgcgcctgaggccatggacgcggccgtgcttggcaacacggccgcagttggtcctcccg
cgtctcagtcgcctcggaattctagatttgcagagttcgatgccgggtgatctcgtgccc
tgtcgaggcgtcggtggcgtttcgggggcggcagggagcgggacaccgggggagagatat
gtgggtggtttttggagagatgagagagcttgtggtattgtgggtgatgaacggtccaga
ctcaatatatgttcattaaatgcaaccaaggagcaggtcagaggggtttctggaaagact
ggtggaggtggtggaaccaggggaggagaaattggaggcatgggagctgcaggattaatt
tctatggcgaacgtgacgaggaggaactttgtagagtcgttggagcagctcagagggcag
ctggcaggagccgatttcgtggcagtggatttggagatgactggagtagaaagtacgaag
tggcgacgcaacttggaacttgatagctatgagacaagataccagaatttgaagcattct
gcggagaaatttgctgtgtggcagtgtggggtctgtcctttcaagtgggacgaagcgcac
aacaagtgggtagcatacccgtacaattttttcatttttcctcgtaatgaattgcagctg
gagctgccggcgcgtagctttttcgcacagactacttctctggagtttttgactaagcat
cggtttgactttaatgcgtgcatttacgacggcatttcttatctttcgcatgaacaagag
gctgttgcaagggtgctcatgggttcagtttctgtgaaacaaaattttccatctggtgta
cacaattcctctgaaatcccgttgaccaaacctggggatgtagcctttgtggagaaaatt
cgcacgcagattggaagatggcgcgacgagttgctctttaatcgccagaagtggcaagtg
gtaaacgagaagttgataactactagtactttagttcaaccccctccttattctcctctc
gttcctttgcccacctctgacattggcaatgattcagtcaccattaagcaggatatagac
gtagggccatcgttgggaagcttacgaccctcattgaacattgacgttacaagccactac
caatcgaggctcgtccagcagataatcaagacacattttcccgacctcgtcgccgctgtg
aatgcgagaggcaatggtccacacgatcggatcagaattcgagtcatctacgtttctccg
aaggaagatatgtctaaagtgattcaagaattggccgatgaggagcggaatgcattggag
acgcgcgtctcgaatgctgtggggttccgaaaagtgttggacgcaattgcggaagccggt
cttcccgttgtgggtcataactgcattctcgacatgacacacatttattccaaattcgtt
ggtcctttacctgctacatcagcagaattttcttcgtctttgcggcaacaatttccttgt
gttatagatacgaagtatcttctcagagcggaaccaacgttgcggggcatattagccagc
cgaagcacatctttagctgttgtatttactcatatctgtcaggtattcgcagacaaggcc
gtggcttcaggcaggttttattttggaaaaggcaagatcctcaacaatgcgtttacaaag
gttgcggtggaagttgcagaagaatttcaacggtatggagggaccaaagacacgggatta
aaacatgaggcaggttttgatgcttatatgacaggttccgtgtttgctcaggcttgtcac
ctgcttcacgttgatgctgctacgattcgaaaaattccagatgctgtgaaggtcggagaa
caaggctttgcaagctatgcaaatttgttagcattgggatgggtaggcaacatggtgctg
gacctgactactggaaaagaggccacaggtgtgaaagccctccgaggtcccacgtcctct
gcggataggcatcccgagcactccacagtggctcttgtgtggggatttccttcaggcagc
aatgaatttgagataagactaattgttcagcgagttttcaacgctgagcggaaatttcca
cctgctgatataacaatcattgatgagagctcagcttttgtacattttagggattcacgc
cacatgcatcaatttttgcggttgatgcaaggaccccgtatttctgacgcaattcctaca
agttttcgagcagctccgtatcaagcttatgaggttctttgtaggtcaccattgacaaca
gagaggttggttgattcggctaacatattgctactggatcgattctatttacaacagacc
cctgcagatactcttgttagcgatatatcctctgtcaaggttctcgaagagattgggtat
gctgaagttggacacaaccattag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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