KEGG   Physcomitrium patens (spreading earthmoss): 112294975
Entry
112294975         CDS       T01041                                 
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112294975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppp03019]
    112294975
   03041 Spliceosome [BR:ppp03041]
    112294975
   03032 DNA replication proteins [BR:ppp03032]
    112294975
Messenger RNA biogenesis [BR:ppp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     112294975
Spliceosome [BR:ppp03041]
 Complex A
  U1 snRNP components
   Sm proteins
    112294975
  U2 snRNP components
    112294975
 Complex B
  U1 snRNP components
    112294975
  U4/U6.U5 tri-snRNP components
    112294975
 Complex C
  U2 snRNP components
    112294975
DNA replication proteins [BR:ppp03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     112294975
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 112294975
NCBI-ProteinID: XP_024401775
Position
18:15256849..15259318
AA seq 137 aa
MSKSLGIPVKLLHEAEGHIVTVELKSGEVYRGSLIECEDNWNSQLESITYTAKDGKVSQL
EHVFIRGSKVRYMIIPDMLKNAPMFKRLDAKIKGKGSSGVGVGRGRASTMQAKARSAARG
SVPPPMGGRGAAPPMRR
NT seq 414 nt   +upstreamnt  +downstreamnt
atgagtaagagtctgggcatcccggtgaaattgctccatgaggcagagggtcacattgtg
accgtggagttgaagagtggggaagtttatcgcggatccttgattgaatgcgaggataat
tggaactcacagctcgagtccatcacctatactgctaaggacggaaaagtctctcaatta
gaacacgttttcattcgaggaagtaaagtgagatatatgatcattcctgatatgctcaag
aatgcccctatgtttaagcgcctggatgccaagattaagggtaagggatcgtcaggtgtt
ggggttggtcgtggtcgagcatctaccatgcaggcaaaggctcgatcagccgccagaggc
tccgtaccacctccaatggggggtagaggagctgcacctcccatgagaagataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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