KEGG   Paenibacillus polymyxa SQR-21: PPSQR21_001380
Entry
PPSQR21_001380    CDS       T03178                                 
Symbol
rho
Name
(GenBank) transcription termination factor rho
  KO
K03628  transcription termination factor Rho
Organism
ppq  Paenibacillus polymyxa SQR-21
Pathway
ppq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PPSQR21_001380 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppq03021]
    PPSQR21_001380 (rho)
   03019 Messenger RNA biogenesis [BR:ppq03019]
    PPSQR21_001380 (rho)
Transcription machinery [BR:ppq03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     PPSQR21_001380 (rho)
Messenger RNA biogenesis [BR:ppq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     PPSQR21_001380 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N ATPase_2 AAA AAA_22 Spore_III_AA OB_RNB AAA_25
Other DBs
NCBI-ProteinID: AHM63863
Position
170853..172190
AA seq 445 aa
MDLQISDLEEMKLTDLYKLAKQYQIPYYGTLKKKELIFAILRAQAEKSGLMFMQGVLEIL
PEGYGFLRPINYLPSTEDIYISASQIRKFDLRTGDLVSGKCRTPKENERYFGLLQVNAVN
GRSPEQAAERLHFPALTPLYPQTKLVLETSPNHLSTRIMDVLAPVGLGQRGLIVAPPKAG
KTLLLKEIANSISTNNPEIELFVLLIDERPEEVTDMQRSVKGEVVASTFDELPENHIKVA
ELVLERALRLVEHKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGA
ARNVEEGGSLTILATALIDTGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPAIDIRRS
GTRREEVLLNKEELDTIWAIRKNMTESHDFVEGFLKKLRNSKTNAEFLASFDLTAPSSSG
SQGSSGGQQRRTTRSTTASVPATTN
NT seq 1338 nt   +upstreamnt  +downstreamnt
atggatctgcaaatttccgatctggaagaaatgaagctgaccgacctgtacaagctggcc
aagcaataccagatcccgtactacggaacgctcaagaagaaagaattaattttcgccatc
ctgcgcgcacaagctgagaagagtggattaatgtttatgcagggtgttctggaaatactt
cctgaaggttacggctttctgaggccgatcaactatctcccgagtaccgaagatatttac
atctctgcttcacaaatccgcaagtttgacctgagaacgggcgatctcgtttccggtaaa
tgccgaacgccgaaagaaaatgaacggtattttggattgcttcaagttaacgccgtcaat
ggaagaagtcctgagcaagctgctgagcggctacattttcctgcattgactccactgtat
ccgcaaaccaaattagtccttgaaacttcccccaaccatttgtctacgagaattatggat
gtactggcccctgtcggacttggacagcgcggacttattgtggcacctcccaaagctggg
aagacgcttctcctcaaagaaattgccaatagcatttctaccaacaatcccgagattgag
ctatttgtcttgttgattgatgaacgccctgaagaagtgactgacatgcagcgttctgtc
aaaggtgaagttgtggcctctacatttgatgaacttcctgaaaatcacatcaaagtggca
gaactggtgttggagcgtgcactgcgtctcgtagaacataaaaaggatgttgtcatcctg
ttggatagcattacacggttggctcgtgcgtacaatctcgtcatccctccttctggtcgt
actttgagtgggggtattgatccggcagcatttcaccgtccaaaacgcttttttggcgca
gctcggaatgtggaggaaggcggtagcttgacgattcttgccacagcgctgattgataca
ggatctcgtatggacgatattatttacgaagagttcaaaggcacaggcaacatggagctg
catttggaccgcaaactggcagaacgtcgtatctttcctgcgattgatattcgtcgttcc
ggtacacgtcgtgaggaagtgctgttgaacaaggaagaattagatacgatctgggctatt
cgtaaaaatatgacggaaagccatgactttgtggaaggcttcctcaaaaaactgcgtaac
agcaaaactaacgctgagtttttagcctcgtttgatttgacagcaccttcttccagcggc
tcgcaaggtagctctggtggccaacaacgaagaactacgcgttctaccacagcgtcggtt
cccgccacaaccaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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