KEGG   Paenibacillus polymyxa SQR-21: PPSQR21_012300
Entry
PPSQR21_012300    CDS       T03178                                 
Name
(GenBank) ku protein
  KO
K10979  DNA end-binding protein Ku
Organism
ppq  Paenibacillus polymyxa SQR-21
Pathway
ppq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PPSQR21_012300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppq03400]
    PPSQR21_012300
DNA repair and recombination proteins [BR:ppq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PPSQR21_012300
SSDB
Motif
Pfam: Ku SCRE YacG CDC24_OB3 ZnF_RZ-type
Other DBs
NCBI-ProteinID: AHM64890
Position
complement(1447677..1448591)
AA seq 304 aa
MHTVWKGAISFGLVHVPVKMFSATEDKDISMRYIHKECGSPLSYVRKCPVCDKEVEWEEI
GKGYEYEKGKFVMFDKEELEQVSGQADKNIVILDFVDLQEIDPIYFQKTYYLSPDQAGSN
AYKLLMNAMKDTGKIGIAQISIRSKSSLAAIRVLDECLAVETMFYPDEIRPIAQVPNLPG
QEEVKEKELTMAKMLIEQLSTPFDAAKYTDQYRERLLDLIQHKVAGEEVRIAPTQPQTNV
VDLMAALQASIEAVKPVVTDPGPAAKKRPARKPAAVTAQQAVAGDAISPAPVKKRRSSTK
RKET
NT seq 915 nt   +upstreamnt  +downstreamnt
atgcatacagtctggaaaggcgcgatcagctttgggctggttcatgtgccagttaaaatg
ttttcagctactgaggacaaggatatttccatgcgttatattcacaaggaatgtgggagt
ccactgagctatgtacggaagtgccctgtttgtgataaggaggttgaatgggaggaaatt
ggaaaaggatacgaatatgaaaaaggaaaatttgtcatgttcgacaaggaggaactggag
caagttagcgggcaagccgataaaaatatcgtgattttggactttgtggatttacaggaa
attgatccgatctactttcagaaaacgtattatttgtccccggatcaggccggctccaat
gcgtataagctgctcatgaatgcaatgaaggataccggaaaaatcgggattgcccaaatc
tccatccgctcgaaaagcagtctggcagccattcgcgtgctggatgaatgcttggcggtg
gagaccatgttttacccggacgaaatccgtcccattgctcaagttcccaacttacctgga
caggaggaggttaaagagaaagagctgaccatggcaaaaatgttgattgagcagctatct
accccttttgatgcagcaaagtatacggatcagtaccgcgagcgtctgctggatcttatc
cagcataaagtagctggcgaagaggtgcgaattgccccaacacagcctcagaccaatgtg
gttgatttaatggctgccctccaagccagtattgaggcagtgaagcctgtcgttaccgat
cctggtcctgctgcgaaaaaacgtcctgcgcgtaaaccagcagccgtgacagcacaacaa
gctgtggcaggcgacgccatctctcctgctccagtcaaaaagagaagaagtagcaccaaa
cgtaaagaaacttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (12)   

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