KEGG   Paenibacillus polymyxa SQR-21: PPSQR21_030990
Entry
PPSQR21_030990    CDS       T03178                                 
Symbol
sSL2
Name
(GenBank) DNA or RNA helicase of superfamily ii
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
ppq  Paenibacillus polymyxa SQR-21
Pathway
ppq03022  Basal transcription factors
ppq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PPSQR21_030990 (sSL2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    PPSQR21_030990 (sSL2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppq03021]
    PPSQR21_030990 (sSL2)
   03400 DNA repair and recombination proteins [BR:ppq03400]
    PPSQR21_030990 (sSL2)
Enzymes [BR:ppq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PPSQR21_030990 (sSL2)
Transcription machinery [BR:ppq03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PPSQR21_030990 (sSL2)
DNA repair and recombination proteins [BR:ppq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PPSQR21_030990 (sSL2)
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom AAA_22
Other DBs
NCBI-ProteinID: AHM66741
Position
complement(3539338..3541161)
AA seq 607 aa
MNPDHPCIVQRDFTVLLEMGLPDSEWARSQLQVYAELVKSPSAFHTYHITPLSLWNAAAL
GWSAEDIQNSLHSMSRWDIPRDLLRDIEQLVSRYGTLTLSRASAKEEQIYGTDTIDANRD
EQESDRDTKASKTNTYTIGDHLILTAETPALLDELLNKKELKQLGLLRTNETSASVPPEN
RGLLKQELTRLGYPVVDTAGYLEGNLLRFTLGKGQTELQLRDYQVKAADAFEGADGLGGS
GVLVLPCGAGKTVIGIAVMNRLQCEVLILTSNTISVRQWIEELKQKTNIPVDSIGEYSGQ
KKEVRPITVATYQILTHRRTKDGEFEHMKLLSERKWGLIIYDEVHLLPAPVFRATADIQA
TRRLGLTATLVREDGCERDVFSLIGPKRYDMPWKELERQGWIAQVDCVELRLPMTADLLE
RSMRAEGRQQYRIAAENPAKLEAVRSLMEKHKGIPTLIIGQYLDQLRKLAQELDVPLITG
SMTQSERVRWFDAFRKGSIQTLLVSKVANFAVDLPDAAVAIEVSGSFGSRQEEAQRLGRI
LRPKPGENKAYFYALVTENSKETDFAARRQLFLIEQGYEYAVRRFDRTMASRSQEDETED
GGKKKEA
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaacccagatcatccttgtattgtacaacgtgattttaccgttctgctggaaatgggt
ttgcccgattcggaatgggcccgttcacagttgcaggtttatgcagagctggtaaaaagt
ccgtccgcttttcatacatatcacatcactccattgtcgctctggaatgcggccgctctc
gggtggagtgctgaggacattcaaaatagtttgcactctatgtctcgttgggatattccg
cgtgatttgttgagagatattgaacagcttgtatctcgttacgggacgttgacgctgtca
cgggcaagtgcaaaagaagaacaaatttacggcactgatacgattgacgcgaatcgtgat
gagcaagagtcagacagagatacaaaggcgagtaaaaccaacacatacacaataggggat
cacttgatcttgacggcagagaccccagctttactggatgagctattaaacaagaaagag
ctaaaacagcttggtttgcttcgcaccaatgagacaagtgcatccgtaccgcccgaaaat
cgtggcttgctcaagcaggaattaactcgcttgggatatcctgttgtggatacggcaggt
tatcttgagggtaatctgcttcgttttaccttgggaaagggacaaacggagttgcagctt
cgtgattaccaggtgaaagccgctgatgcatttgaaggtgcagacggcttaggggggagt
ggtgtactagtgctcccatgtggagccggaaaaacagtgatcggtattgcagtgatgaat
cgccttcagtgtgaggtgctcattttaacttctaatactatctccgtgcggcaatggatc
gaagaattgaagcaaaagacgaatattcctgtcgattctatcggggaatacagtggtcag
aaaaaggaggtccgaccgataacggtggcaacctaccagattttgacgcatcgtcgcacc
aaagacggagagtttgaacatatgaagctactgagtgagcggaagtggggactcattata
tatgatgaggtacatttgctgcctgcgccagtatttcgagcgacggctgatattcaggct
acccgtcgtttgggattaacagctacgttagttcgagaggacgggtgtgagcgggatgtg
ttctctttaattggacccaaacggtacgatatgccgtggaaggaactggaacgacagggc
tggattgctcaggtcgattgtgtagagctgcgtttgcccatgaccgctgaccttttggag
cgaagtatgcgcgctgaaggcagacagcaataccgaattgcagccgaaaatccggctaag
ctggaggcagtacgcagtctaatggagaaacacaaggggatacccacgcttattattggc
caatatttagaccagttacgtaaattggctcaggagctggatgttccactgattacggga
tccatgactcagagtgagcgggtgcgttggttcgatgcgtttcgcaagggcagtattcaa
accctattggtatccaaggtggcgaactttgcggtggatttgccggatgcagcggtggcc
atagaagtatcgggtagctttggctcccgtcaggaagaagcgcagcgacttggccgcatt
ttacgaccaaagccaggcgagaataaagcttatttttatgcattagtgacagagaacagt
aaggagacggattttgcagcacgtcgtcagctgtttctgattgagcagggctatgaatat
gcggttcgcaggtttgataggacaatggctagcagaagccaggaggatgagacagaagat
ggcggaaagaaaaaggaggcctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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