KEGG   Photobacterium profundum: PBPRA2953
Entry
PBPRA2953         CDS       T00173                                 
Symbol
DNAE
Name
(GenBank) putative DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
ppr  Photobacterium profundum
Pathway
ppr03030  DNA replication
ppr03430  Mismatch repair
ppr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PBPRA2953 (DNAE)
   03430 Mismatch repair
    PBPRA2953 (DNAE)
   03440 Homologous recombination
    PBPRA2953 (DNAE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppr03032]
    PBPRA2953 (DNAE)
   03400 DNA repair and recombination proteins [BR:ppr03400]
    PBPRA2953 (DNAE)
Enzymes [BR:ppr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PBPRA2953 (DNAE)
DNA replication proteins [BR:ppr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PBPRA2953 (DNAE)
DNA repair and recombination proteins [BR:ppr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PBPRA2953 (DNAE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon tRNA_anti_2
Other DBs
NCBI-ProteinID: CAG21287
UniProt: Q6LN39
Position
1:complement(3383753..3387229)
AA seq 1158 aa
MADPRFIHLHIHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHGA
GMKPIIGADFKVHSEELENELADLTILATDNDGYQNLTMLISKAYLRGHVQHQPVIDKEW
LVQYGKGLILLSGRCGDVGKALLKGNQLLVNRCLEFYKTHFEDSFYLELVRTGRPDEDAY
IHFAVELAANEDLPVVATNDVRFLSAEQFDAHEIRVSIHDGYTIVDPNRPKLYSPQQYLR
TEEEMCELFSDIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGDLSTEDFLVVKSREGLE
RRLAYLFPDEAVRVEKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGPG
RGSGAGSLVAYALDITDLDPLKFDLLFERFLNPERVSMPDFDIDFCMDKRDLVIDHVAEI
YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMIPAEPGMTLAKAFEAEPQL
GDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTITDFSPLYCDAEGANPVTQF
DKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKEPINIASIPMDDKKSFAMLQ
RSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEV
SYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA
KQRTTFEQGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLYLKAHYPAE
FMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYRFNVDEQGAIVYGIGAVKGV
GEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSGAMDRLGPNRATLMAT
LNDAIKAAGQHHHAEAFGQADMFGVLTAAPEEVEQAYANIPEWPDKIWLEGERETLGLYL
TGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGLVIAARVMTTKRGTRIGLMTLDDR
SGRMEVMLFSDALERYLDLLEKDKIVVVSGQVSFDDFNGGLKMSAREVLDISEAREKHLR
GLAISVTEQQVDEQFFARFSQVLEPHRAGTVPVNVYYQRSNARAKLTLGTEWRITPSDQL
ILDLKLLLGEKQVELEFN
NT seq 3477 nt   +upstreamnt  +downstreamnt
atggctgatcctcgctttattcatcttcatattcatagtgacttttcaatggttgatggc
ttatcaaaagtctcaccgttagttaaaaaagtggctgaaattggtatgcccgcaatggca
ttaaccgactttactaacctgtgtggtttggtgaaattctactttgcagcacatggtgct
ggaatgaagccgatcatcggcgctgattttaaagtgcattcagaagagcttgaaaatgag
ctcgctgatctcaccattttggcgactgacaacgacggttatcaaaatttaaccatgttg
atttcgaaagcgtatttgcgtggtcatgttcagcatcaacccgttatcgataaagagtgg
ttagttcaatatggcaaagggctaattttactgtcgggtcgatgtggcgatgtcggtaaa
gccttactaaaaggtaaccaattgctggtcaatcgctgtcttgagttctataaaacccat
tttgaagatagcttttatttggagttagtccgaactgggcgtcctgatgaagatgcatac
attcactttgcggttgaacttgctgcgaatgaagatctgcccgttgtcgcaaccaacgat
gtgcggtttttatctgcggaacaatttgatgcgcacgaaatccgagtgtcaattcatgat
ggttacaccattgttgatcctaatcgaccaaagctatacagcccacaacagtatttacgt
actgaagaggaaatgtgtgagttattctcagatattcctgaagcgttggcgaacagtgtt
gaaatagcaaaacgttgtaatgtaacggttcgtcttggggaatacttcctgccgaatttc
cctactggggatctaagtactgaagatttcttggtggttaagtctcgcgaaggtttagag
cgacgtttagcgtacctttttcctgatgaagctgtacgtgtcgaaaagcgccctgagtac
gatgagcggcttgagattgaacttaaagtcatcaatcagatggggttccccggctatttt
ctgatcgtaatggagtttatccaatggtcaaaagataatgatgtgccagttggtccgggt
cgtggttcaggtgcgggttcattggtggcttacgcactcgatattaccgatcttgaccca
ttgaaatttgacttactgttcgaacgttttttgaacccagaacgtgtatcaatgcccgat
ttcgatatcgacttttgtatggataaacgggatttagttattgatcacgttgctgaaata
tatggtcgtgatgcggtatctcagatcattacgtttggtactatggctgcgaaagcggta
attcgagatgtagggcgagtactcggtcacccgtacggttttgttgatcgtctttctaaa
atgatcccggcagagcccggtatgacattggctaaagcctttgaggcagaaccgcaactt
ggggatgcctacaatgccgatgaagaagtaaaagccttaattgatatgtgtcgcatcctt
gaaggtgtaacacgtaatgcgggtaagcatgcgggtggtgttgtaatttcacccacgacg
atcactgatttctcaccactgtattgcgatgcagaaggtgctaaccctgttacccagttt
gataaaaatgatgttgaaaccgcaggcttggttaagtttgacttcttgggtctacgaaca
ttaactatcattgactgggcgttagctcttattaaccctcgtcgagaggctgaaggcaaa
gagccgatcaatattgcttcgattcctatggacgataaaaagtcatttgcgatgttgcag
cgctctgaatcgacagcagtgttccagttagaatcgcgaggaatgaaggatctgatcaag
cgtcttcaacctgatagctttgaagatatgatcgcactggtagcattgttccgtcccggt
cctttgcaatccggtatggtagataactttatcgaccgtaagcatggtcgagaagaagtg
tcataccctgatgccacttggcagcatgaatcgttgaaagagattctcgaacccacttac
ggcattatcttgtatcaagaacaagttatgcaaattgcacaggtactgtctggctacacc
ttgggtggggccgatatgttacgtcgtgcgatgggtaagaaaaaacctgaagaaatggcc
aagcagcgcaccacctttgaacaaggcgcggttaataacggggtcgatggcgaactcgcc
atgaagatcttcgacttggtagaaaaatttgccggttatggttttaataaatctcactct
gctgcgtatgccttggtatcgtaccaaacgctgtatttaaaagcgcattatcctgcagaa
ttcatggctgcggtaatgactgctgatatggataacaccgataaaattattggtttggtt
gatgaatgcttacgcatgaagataccgttactgccgcctgatgtgaataaagggctttat
cgatttaatgttgatgagcaaggcgcgattgtttatggtatcggcgcagtaaaaggtgtc
ggtgaagggccgatagaaaatttgattgaagcccgcgaaaaaggtggtcattttaaagat
ttattcgatttctgtgcgcgtattgacacaaaaaaagtcaataagcgtgtgcttgagaaa
ttgattaaatcaggtgcgatggatcgcttaggccctaaccgtgccactctgatggcgacg
ttgaacgatgccattaaagcggctggtcagcatcatcatgcggaagcctttggtcaggct
gatatgtttggtgtattgactgctgctcctgaagaggtcgagcaagcttatgccaatatt
ccagaatggccagataagatttggttggaaggtgaacgtgaaactctggggttgtactta
acaggtcacccgataaatgcctacatttcagagttaaagcattacaccacttggcgctta
aaagatgctaacccaacagggcgtgataaagtagcgtctgttgcagggttagtgattgct
gcacgcgttatgacaacaaagcgtggaacacgtattggtttaatgacactagatgatcgt
tcaggtcgtatggaagtcatgttattctctgatgcgcttgaacgttaccttgatttgctt
gaaaaagacaaaatagtggttgtttcaggacaggtcagctttgatgatttcaatggtggc
cttaaaatgtcagccagagaagtactggatatctctgaggcaagagaaaaacaccttaga
ggactggctatctcggtaacagaacagcaagtcgatgaacagttttttgcacgcttcagc
caagtgctggagcctcacagggcaggtacagtacctgttaatgtgtattatcagcgctcg
aatgcacgtgccaaactcactttaggaacagaatggcgtattacgccgtcggatcagtta
attctcgatctcaagttgctattaggtgagaagcaagtcgagcttgaatttaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (33)   

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