KEGG   Photobacterium profundum: PBPRB0960
Entry
PBPRB0960         CDS       T00173                                 
Symbol
PLU0719
Name
(GenBank) hypothetical DNA-directed RNA polymerase, sigma subunit
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
ppr  Photobacterium profundum
Brite
KEGG Orthology (KO) [BR:ppr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppr03021]
    PBPRB0960 (PLU0719)
Transcription machinery [BR:ppr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PBPRB0960 (PLU0719)
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r3 Sigma70_r1_2 DUF2779
Other DBs
NCBI-ProteinID: CAG22832
UniProt: Q6LIP8
Position
2:1093648..1094523
AA seq 291 aa
MEIKKAETQTFDADVIQLYLREIALKPLLTKHEEILYSRKSLTGDKEAKKVMIESNLRLV
VSIAKKYRGSGMQLSDLIDEGNIGLITSVEKFDPERGFRFSTYATWWIKQTIERCIHNQA
RTIRLPVHVSKEINTIIRTHKQLMKKNNQEPTREEVAEKLERSVDDISSVLAYDAPIVSF
DQTINDDANSQSISVFIADDSSDKPESQVDKDDIKGLALAMLENLNQRDREILCRRFGLL
GYEVQTLQQVANEVGLTRERIRQLQVSSLKKLKNTLERDNYDLELLFAQSA
NT seq 876 nt   +upstreamnt  +downstreamnt
atggaaatcaaaaaagctgagactcaaacttttgacgcagatgtaatccagctctatttg
cgagaaatcgctttaaagcctcttttaactaaacatgaagaaattttgtatagccgaaaa
agccttactggtgacaaagaagccaaaaaagttatgatcgagagtaacttgcgacttgtt
gttagtattgccaagaagtatcgtggaagtggcatgcaactcagtgatctaattgatgaa
ggaaatatcggtttaattacttcagttgagaaatttgacccagagcgtggattccgtttt
tctacctatgcaacatggtggattaaacaaactatcgagcgttgtattcataatcaagcg
cgtacaattcgtcttcctgttcatgtttctaaagaaattaatacaatcattagaacgcat
aagcagctaatgaagaaaaataaccaagagccaacacgtgaagaagtcgctgaaaagttg
gaacgtagtgttgatgatatttcttctgtattagcttacgatgcccctattgtttctttt
gatcaaacaattaacgacgatgctaattcgcagtcaatctcagtctttattgctgacgac
tcttctgataagccagaaagccaagtcgataaagacgatataaaaggccttgctttagca
atgctagaaaacttgaaccagcgagatcgtgaaattttgtgtcgtcgctttggtttacta
ggctatgaagttcagacgcttcaacaagttgcgaatgaagtggggttaacacgcgaacgt
attcgtcagctgcaagtcagttcgttgaaaaagctgaaaaatacgctagaaagagataat
tacgacttagagttattgtttgctcagtctgcttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (30)   

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