KEGG T03613: PPC

Pseudomonas protegens Cab57: PPC_0753

Entry

PPC_0753          CDS       T03613

Name

(GenBank) exodeoxyribonuclease V, beta subunit

K03582

exodeoxyribonuclease V beta subunit [EC:3.1.11.5]

Organism

ppro Pseudomonas protegens Cab57

Pathway

ppro03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:ppro00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    PPC_0753
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppro03400]
    PPC_0753
Enzymes [BR:ppro01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     PPC_0753
DNA repair and recombination proteins [BR:ppro03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     PPC_0753

SSDB

Motif

Pfam:

UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_30 AAA_11 AAA_25 AAA_12

Other DBs

NCBI-ProteinID:

BAO60100

Position

859830..863522

AA seq 1230 aa
MTAQAPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEAAGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFRDETSAPDGLIVELREQYPVEQWAACANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGQVLRDYWRLFCYPMQGD
ALNWVRSHWVGPAELMPRVRAMFGNERRDPPEQTPSELIEACLQERREALVQIKAPWREW
AAQLREICLQGVASKSVDGRKMQARFFEPWFEKISAWAEDESVEQLDIGTGFTRLTPEGM
SEAWKGAAPDHPGLDAMAGLKASLDALPSPDAAVLQHAAQWVGARFEEEKRRRAEMGFDD
MLLRLDSALQSDGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRIEANDPETGLF
LIGDPKQAIYAFRGADIYTYLRARQATSGRLHTLGTNFRSSQAMVSAVNHVFLQAEQRPQ
GQGAFLFREADGENPVPFLAVAAQGRKEQLLVDGQPVPALNFWQLPSEQPLSGAQYRQHQ
AAACATAIVGLLNGGQQGRSGFVREQQALKGLLPADIAILVRDGKEAQAVRGELAARGVR
SVYLSDKDSVFAAQEARDVLVWLKACAEPDVERPLRAALASLTLNLPLLELERLNQDELA
WEARVMQFRGYRAIWRSQGVLPMLRRLLHDFQLPQALMARSDGERVLTNLLHLSELLQQS
AAELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSTKPVDGSRLPLHYHDAAGKPQVSLRPTPELIALADEERLAEDLRLLYVALTRAQHACW
LGVADLKRGNHSSSVLHLSALGYLLGGGDVLGESSALLRWLLDLQQGCAAIGVSELPVVD
DQRYRPPRNEATLLAPLTPSRRAAENWWIASYSALRISDILGAGSTEAPENPQAQKLFDD
ERLDPEAPRETLASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFAAAPEAIEDAVARRCNR
RGWQGWIPTLSDWLQHLLQAPLPLGEGQAPVVLGQLTQYRVEMEFWFASHKVDVLKLDER
VRQQTHQGAPRVTAEPVLLNGMFKGFIDLTFEHQGRYYVADYKSNWLGADDAAYTEQAME
QSILDNRYDLQYVLYLLALHRQLKARLADYDYDRHVGGALYLFLRGTRAASQGAYFVRPP
RQLIEQLDRMFQGQPEPPKAEPAWEQGVLL

NT seq 3693 nt +upstreamnt +downstreamnt
atgactgcacaagctcccctggccctggcatttcctctgcgcggcagccagttgatcgag
gccagtgccggtaccggcaagaccttcaccatctccgcgctctacttgcgcctggtgctg
ggccatggcggtgaggcggcgggtttcgggcgtgaattgctgccgccgcagatactggtg
gtgacctttaccgatgccgccaccaaggaattgcgcgagcgcattcgcacgcgcctggcg
gaagccgcgcgcttctttcgcgatgaaaccagcgcccccgatggcctgatcgtcgagttg
cgtgagcaataccccgtcgagcagtgggccgcctgtgccaatcgcctggacatcgccgcg
caatggatggatgaggccgcggtctcgaccatccacagttggtgccagcgcatgttgcgc
gaacatgcgttcgacagcggcagcctgttcacccagaccctggaaaccgaccacagcgac
ctgctgggccaggttctgcgcgattactggcggctgttctgctacccgatgcagggtgat
gccctgaactgggtgcgcagccattgggtcgggccggccgaactcatgccccgagtgcgg
gcaatgttcggcaacgagcgtcgggacccacccgaacagacgccgagcgagttgatcgaa
gcctgcctgcaagaacgtcgtgaagccctggtgcagatcaaggcgccctggcgcgagtgg
gccgcgcaactgcgggagatctgcctgcaaggcgtggccagcaagagcgtcgacgggcgc
aagatgcaggcccggttcttcgagccctggttcgaaaagatcagtgcctgggccgaggac
gaatccgtcgagcagctggacatcggcaccggcttcacccgcctgacccccgaaggcatg
agcgaggcctggaaaggcgcggcccccgatcaccccgggctcgacgccatggccgggctc
aaggccagcctcgatgccttgcccagcccggatgcggcggtcctgcaacacgccgcgcaa
tgggtgggggcacgtttcgaagaagagaagcggcggcgcgccgagatgggcttcgacgac
atgctgctgcgcctggacagcgccctgcagagcgatggcggcgagcgcctggcgaccctg
attcgcgagcagttcccggtggccctgatcgacgaattccaggacaccgacccggtgcag
taccggatcttcgaaagcatctaccggatcgaggccaacgaccccgagaccggcctgttc
ctgatcggcgatcccaagcaggcgatctacgccttccgtggcgccgatatctacacctac
ctgcgggcacgccaggccaccagcgggcgcctgcacaccctgggcaccaacttccgttcc
agccaggcgatggtcagcgcggtcaaccatgtgttcctgcaagccgaacagcggccgcag
ggacagggagccttcctgtttcgcgaagcggatggcgagaacccggtgccattcctggcg
gtggccgcccaggggcgcaaggagcaactgctggtcgacggccagccggtgccggcactt
aacttctggcaattgccttcggaacagccgctgtccggggcccagtatcgccagcatcag
gcggcggcttgcgccactgcgattgtcggcctgctcaatggcggccagcaggggcgcagt
gggtttgtccgtgagcagcaagcgctgaaaggcttgctaccggcggatatcgcgatcctg
gtgcgcgatggcaaggaggcccaggccgtgcgcggcgagctggcggcccgcggggtgcgc
agtgtgtacctgtcggacaaggactcggtgttcgccgcccaggaagcccgggatgtgctg
gtgtggctcaaggcttgcgccgagccggacgtggagcggccgctgcgcgcggccctggcg
tccctcaccctgaacctgccgctgctggagctggagcggctcaaccaggatgaactggcc
tgggaagcgcgggtcatgcagttccgtggctaccgggcgatctggcgcagccagggcgtg
ctgcccatgctgcggcgcctgctgcatgacttccagctgccccaggcgctgatggcccgc
agtgatggcgagcgggtgctgaccaaccttctgcacctgtccgagctgctgcaacaaagc
gccgccgaactcgacggcgagcaggccctgatccgccatctggccgagcacctggcgctg
tccgggcaggcgggggaggagcagatcctgcgcctggaaagcgatgagcaactggtcaag
gtggtgaccatccacaagtccaagggcctggaataccccttggtgttcctgcccttcatc
tgttccaccaagccggtggatggcagccgcttgccgctgcattaccacgatgctgccggc
aagccccaggtcagcctgcggcccaccccggagctgattgccctggccgatgaagagcgc
ctggcggaagacctgcggctgctctatgtggccctgaccagggcccagcatgcctgctgg
ctgggggtggccgatctcaagcggggcaatcacagcagctcggtattgcacctttcggcc
ctgggttacctgctggggggcggcgatgtcctgggcgaatccagcgccttgttgcgctgg
ctgctggacctgcagcagggctgcgctgcgattggcgtgtccgagctgcccgtcgtcgat
gaccagcgctatcggccaccgcgcaacgaggccaccctgctggcgccgctgacgcccagc
cgccgcgccgcggaaaactggtggattgcctcctacagtgccttgcgcatcagcgacatc
ctgggggcgggcagcaccgaggcgccggaaaacccccaggcgcagaaactcttcgacgac
gaacgcctggaccccgaagctcctcgggaaaccctggccagcggcggcgatatccaccgc
ttcccccgcggcccgaaccccgggaccttccttcatggcctgctggagtgggctggggag
gagggttttgccgctgcccccgaggcgatcgaggacgccgtggcccggcgctgcaatcgc
cgcggctggcaaggctggatcccgaccctgagcgactggctgcagcacctgctgcaagcg
cccttgcccctgggcgagggccaggcaccggtggtgctcgggcagttgacccagtaccgg
gtcgagatggagttctggttcgccagccacaaggtcgatgtgctcaagctcgatgagcgg
gtacgccagcaaacccatcagggcgcgccccgagtcacggccgagccggtattgctcaac
ggcatgttcaagggttttatcgacctgaccttcgaacaccagggccgctattacgtggcc
gactacaaatccaactggctgggcgcggacgacgcggcctacaccgagcaggccatggaa
caatcgattctcgacaaccgttacgacctgcaatacgtgctgtacctgctggccctgcac
cgacaattgaaggcccggctggcggactacgactacgatcgccatgtgggcggcgccttg
tacctgttcctgcggggcacccgtgccgccagccagggggcctacttcgtccggccgcct
cgacagttgatcgagcaactggaccgcatgttccagggccagcccgagccacccaaggcc
gagcccgcctgggagcagggagtgctgctatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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