KEGG T03613: PPC

Pseudomonas protegens Cab57: PPC_1242

Entry

PPC_1242          CDS       T03613

Symbol

truD

Name

(GenBank) tRNA pseudouridine synthase D

K06176

tRNA pseudouridine13 synthase [EC:5.4.99.27]

Organism

ppro Pseudomonas protegens Cab57

Brite

KEGG Orthology (KO) [BR:ppro00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ppro03016]
    PPC_1242 (truD)
Enzymes [BR:ppro01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.27  tRNA pseudouridine13 synthase
     PPC_1242 (truD)
Transfer RNA biogenesis [BR:ppro03016]
Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    PPC_1242 (truD)
Prokaryotic type
    PPC_1242 (truD)

SSDB

Motif

Pfam:

TruD LacI

Other DBs

NCBI-ProteinID:

BAO60589

Position

1393067..1394125

AA seq 352 aa
MNELQLLGPRAYGDALGSAVLKATAEDFQVDEVLDIPLSGEGEHLWLWVEKRGLNTEEAA
RRIAKAAGVSLRTVSYAGLKDRQALTRQWFSVQLPGKADPDLGAAENHTLKILEATRHKR
KLQRGAHAANGFTLRLTELKADQAAIDERLKRIAAQGIPNYFGAQRFGHDGGNLVDARSW
AARQALPEQRNVRSRLLSTARSYLFNQALAARVADGTWQQAQVGDLLAFTDSRSFFMAGP
DECTDPRLAILDLHPTGPLWGEGESPSGGAVHELEQQMADREAALCQWLIKAGMSHERRI
LRLPIGGLTWHYPEPDILQLEFVLPAGCFATALVRELVDLVPVGQTDSSCAF

NT seq 1059 nt +upstreamnt +downstreamnt
atgaatgaactgcaattgttgggcccgcgggcctatggcgatgccctgggcagcgccgta
ctcaaggccactgccgaagacttccaggttgatgaagtactcgatatcccgctgagcggg
gaaggcgagcatctgtggctgtgggtggaaaaacgcggcttgaacaccgaggaagcggcg
cggcggatcgccaaggcggcgggggtgtcgttgcgcaccgtcagctatgccgggctcaag
gatcgccaggcgctgacccgccagtggttcagtgtgcaactgccgggcaaggccgatccg
gatcttggcgcagcggaaaatcatactctgaagatccttgaggccacccgccacaagcgc
aaattgcagcgtggggcccatgccgccaatggctttaccctgcgcttgacagagctcaag
gcggatcaggcagccatcgatgagcgcctgaagagaattgctgctcaaggtattcccaac
tatttcggcgcccagcgcttcggccacgacgggggcaacctggtcgacgcccgtagctgg
gctgcccgccaggcgctgccggagcagcgcaatgtgcgttcgcgcctgttgtccaccgcc
cgcagctacctgttcaaccaggcgctggcagcgcgagtggcggatggcacttggcagcag
gcgcaagtgggcgacttgctggcatttaccgacagccgcagctttttcatggcaggcccg
gatgaatgcacggatccgcgcctggcaattcttgacttgcatcccacaggcccgttgtgg
ggcgaaggcgagtctccgtcgggtggtgcggttcatgaacttgaacagcagatggccgac
cgcgaggcggcactgtgccaatggctgataaaagccggcatgagccacgaacgacgcatc
ctgcggctgcccattggcggtttgacgtggcattatcccgagcctgatattctgcaactg
gaattcgtcctcccggccggatgtttcgccaccgccttggtgcgtgaactcgtcgatctg
gtgccggtggggcagacggacagctcatgcgcattctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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