KEGG   Paroceanicella profunda: FDP22_19925
Entry
FDP22_19925       CDS       T06319                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
ppru  Paroceanicella profunda
Pathway
ppru03030  DNA replication
ppru03430  Mismatch repair
ppru03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FDP22_19925 (dnaE)
   03430 Mismatch repair
    FDP22_19925 (dnaE)
   03440 Homologous recombination
    FDP22_19925 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppru03032]
    FDP22_19925 (dnaE)
   03400 DNA repair and recombination proteins [BR:ppru03400]
    FDP22_19925 (dnaE)
Enzymes [BR:ppru01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     FDP22_19925 (dnaE)
DNA replication proteins [BR:ppru03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     FDP22_19925 (dnaE)
DNA repair and recombination proteins [BR:ppru03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     FDP22_19925 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon HROB
Other DBs
NCBI-ProteinID: QDL94128
UniProt: A0A5B8FJC3
Position
pD4M1A:complement(409803..413243)
AA seq 1146 aa
MSTPRFIHLRTHTAYSLLEGAIQAKALPKLAAGDDMPAVAVTDTGNLFCALEFSEYAAGA
GLQPIIGCQMRLAYAAAASPTEKAPAPRDIVLLAQDEAGYLNLMKLNSCAFLDSPDAEPH
ITLPELTRHAEGLICLTGGAAGPVGQLLQDGQGAKARALTEKLAGLFPGRLYIEVQRHGT
APERRTKAEAATEPGFVELAYALELPLVATNDVHFANREMYEAHDALLCIADGAYVDQAA
PRRRLTPEHCFKTQAEMAALFDDLPEALENTVEIARRCAFRVRTRKPILPRFAEDEVEEL
RRQAAEGLARRLEVIPHAAPVEEYEKRLEYELGIIEGMGFPGYFLIVADFIKWAKDHDIP
VGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIHY
VQEKYGREKVAQIITFGALLSKAAVRDVGRVLQMPFMQTDRLSKMIPVEGVKPVSIAKAL
IEEPRLREAAREEEVVARMLDFAEKLEGLLRNASTHAAGVVIGDRPLDELVPLYQDPRSD
MPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDLLSLRGISLDIGTIPLDDKATYDLY
TSAQTVAVFQVESSGMRDALRQLRPTCIEDIIALVALYRPGPMENIPKYCNVKNGKEKLE
SLHPSIDHILAETQGIIVYQEQVMQIAQVMGGYSLGGADLLRRAMGKKIKEAMDAERPKF
QDGAKQNGVDAAKAAEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVM
NCDIHLTDKLNVYAQEIRRLEIPLIPPCVNRSEATFSVKEGAVVYALGGLKNVGVEAMRM
IVEARGTGFTDLFDFARKVDMKRIGKRPLEMLARAGGFDELDPNRRRVLESLEALIGYSA
ATLADRDSAQTSLFGDGGEALPAPRLPNPEDWLPTERLAEEMKAVGFYLSGHPLDDYMGP
LKRKRVLTFAELVQKCAGGATVAKIAGSVTGRQERKSARGNRFAFVQLSDPTGIFEVTVF
SDTLEQAREFLEPGSNVVLTVEAEPQGDQLKLLARAAQPVDMAVADAAASGLRIFLNEPG
AVESIRARLDDAGKGMSRGRGPVHLVLVHPDLPGEVEIALKETYPVTPQIRGAIKSAHGV
MHVEEF
NT seq 3441 nt   +upstreamnt  +downstreamnt
atgagcacgccgcgattcatccacctgcgcacccacaccgcctattcgctgctcgagggc
gcgatccaggcgaaggccctccccaagctcgccgccggagacgacatgccggccgtggct
gtcaccgacacgggcaacctcttctgcgcgctggagttttccgagtatgccgcgggggca
gggctgcagcccatcatcggctgccagatgcgcctcgcctatgccgccgccgcgagcccg
accgagaaggcccccgccccgcgcgacatcgtgctgctggcgcaggacgaggcgggctat
ctcaacctcatgaagctcaactcctgcgccttcctcgacagcccggacgccgagccccac
atcaccctgcccgagctcacccgccacgccgaggggctgatctgcctcaccggcggcgcc
gccgggccggtgggccagctgctgcaggacgggcagggcgccaaggcgcgcgccctcacc
gagaagctcgccgggctcttccccggccggctctacatcgaggtgcagcgccacggcacg
gcgccggagcggcgcacgaaggccgaggccgccaccgagcccgggttcgtcgagctcgcc
tacgcgctggagctgccgctggtggccaccaacgacgtgcatttcgccaaccgcgagatg
tacgaggcgcatgacgcgctgctgtgcatcgccgatggcgcctatgtcgaccaggccgcg
ccgcgccgccggctcacgcccgagcattgcttcaagacgcaggccgagatggccgccctc
ttcgacgacctgccggaggcgctggagaacacggtggagatcgcccggcgctgcgccttc
cgggtgcgcacgcgcaagcccatcctgccgcgcttcgccgaggacgaggtggaggagctg
cgccgccaggccgccgagggcctcgcccggcggctggaggtgatcccgcacgccgccccg
gtggaggaatacgagaagcggctggaatacgagctcggcatcatcgagggcatgggcttt
cccggctacttcctcatcgtcgccgatttcatcaaatgggcgaaggaccatgacatcccg
gtggggccgggccgcggctccggcgcgggcagcctcgtggcctacgcgctcaccatcacc
gacctcgaccccctgcgctactcgctgctgttcgagcgcttcctgaaccccgagcgcgtg
tcgatgcccgacttcgacatcgacttctgcatggaccgccgcgaggaggtgatccactac
gtgcaggagaaatacggccgcgagaaggtggcgcagatcatcaccttcggcgcgctgctc
tccaaggccgcggtgcgcgacgtgggccgcgtgctgcagatgcccttcatgcagaccgac
cgtctgtcgaagatgatcccggtggagggggtgaagccggtctccatcgccaaggcgctg
atcgaggagccgcgcctgcgcgaggccgcgcgggaggaggaggtcgtcgcccgcatgctc
gacttcgccgagaagctcgaggggctgttgcgcaacgcctccacccatgccgcgggcgtg
gtgatcggcgaccgcccgctcgacgagctggtgccgctctaccaggacccgcgctcggac
atgccggccacccagttcaacatgaaatgggtggagcaggccgggctggtgaagttcgac
ttcctggggctgaagacgctgacggtgatccagaacgccatcgacctgctttccctgcgc
ggcatcagcctcgacatcggcaccatcccgctcgacgacaaggcaacctacgacctctac
acctcggcccagaccgtggcggtgttccaggtggaaagttcgggcatgcgcgacgccctg
cgccagctccgccccacctgcatcgaggacatcatcgcgctggtggcgctctaccgcccc
ggcccgatggagaacatcccgaaatactgcaacgtgaagaacgggaaggagaagctcgaa
agcctccacccctcgatcgaccatatcctggccgagacgcagggcatcatcgtctatcag
gaacaggtgatgcagatcgcccaggtgatgggcggctactccctcggcggcgccgacctt
ttgcgccgggccatgggcaagaagatcaaggaggcgatggacgccgagcgcccgaagttc
caggacggcgcgaagcagaacggcgtggacgcggccaaggccgccgaggtgttcgacctg
ctggagaagttcgccaactacggcttcaacaagtcccacgccgccgcctatgcggtggtg
agctaccagaccgcctggctgaaggccaaccatccggtggagttcatggccgcggtgatg
aactgcgacatccacctcaccgacaagctcaatgtctacgcgcaggagatccgccggctg
gagatcccgctgatcccgccttgcgtgaaccgctccgaggccactttctcggtgaaggag
ggcgcggtggtctatgcgctcggcgggctgaagaacgtgggcgtggaagcgatgcggatg
atcgtggaggcgcgcggcaccggcttcaccgacctgttcgacttcgcccgcaaggtggac
atgaagcgcatcggcaagcgcccgctggagatgctggcccgcgcggggggcttcgacgag
ctggacccgaaccgccgccgggtgctggagagcctcgaagcgctgatcggctattccgca
gccaccctggcggaccgggattcggcgcagacctcgctcttcggtgacgggggcgaggcg
ctgcccgccccgcgcctgcccaacccggaggactggctgcccaccgagcggctggccgag
gagatgaaggccgtgggcttctacctctcgggccatccgctggacgattacatgggcccg
ctgaagcgcaagcgcgtgctcaccttcgccgaactggtgcagaaatgcgccggcggggcc
acggtggccaagatcgccggctcggtgacggggaggcaggagcgcaagtccgcccgcggc
aaccgcttcgccttcgtgcagctttccgaccccacggggatcttcgaggtcaccgtcttc
tccgacacgctggagcaggcgcgcgagttcctcgagcccggctccaacgtggtgctgacg
gtggaggccgagccgcagggcgaccagctcaagctgctcgcccgcgccgcccagccggtg
gacatggccgtggccgatgccgcagcctcgggcctgcgcatcttcctcaacgagccgggc
gcggtggagagcattcgcgcgcggctggacgatgccggcaagggcatgtcgcgcgggcgc
gggccggtgcatctcgtgctcgtgcacccggacctgcccggcgaggtggagatcgccctg
aaggagacctatccggtcacgccccagatccgcggcgcgatcaagtccgcgcatggcgtg
atgcatgtcgaggaattctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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