KEGG   Pan paniscus (bonobo): 100988129
Entry
100988129         CDS       T02283                                 
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X8
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
pps  Pan paniscus (bonobo)
Pathway
pps03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pps00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    100988129 (KDM2B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pps03000]
    100988129 (KDM2B)
   04121 Ubiquitin system [BR:pps04121]
    100988129 (KDM2B)
   03036 Chromosome and associated proteins [BR:pps03036]
    100988129 (KDM2B)
Enzymes [BR:pps01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     100988129 (KDM2B)
Transcription factors [BR:pps03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    100988129 (KDM2B)
Ubiquitin system [BR:pps04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     100988129 (KDM2B)
Chromosome and associated proteins [BR:pps03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    100988129 (KDM2B)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     100988129 (KDM2B)
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box Cupin_8 JmjC AppA_SCHIC
Other DBs
NCBI-GeneID: 100988129
NCBI-ProteinID: XP_054952237
Ensembl: ENSPPAG00000035060
Position
10:complement(129514895..129684962)
AA seq 1298 aa
MAGPQMGGSAEDHPPRKRHAAEKQKKKTVIYTKCFEFESATQRPIDRQRYDENEDLSDVE
EIVSVRGFSLEEKLRSQLYQGDFVHAMEGKDFNYEYVQREALRVPLIFREKDGLGIKMPD
PDFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQRDKLYNVISLEFSH
TKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNAIAEMKYPKVKKYCLMSVKGCFTD
FHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRIEL
KQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYY
EMCWYVLERYVYCVTQRSHLTQEYQRESMLIDAPRKPSIDGFSSDSWLEMEEEACDQQPQ
EEEEKDEEGEGRDRAPKPPADGSTSPTSTPSEDQEALGKKPKAPALRFLKRTLSNESEES
VKSTTLAVDYPKTPTGSPATEVSAKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIED
PQALLEGVKNVLKEHADDDPSLAITGVPVVTWPKKTPKNRAVGRPKGKLGPASAVKLAAN
RTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTA
VCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECP
KCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDE
HPKKVPPDGLLRRKSDDVHLRKKRKYEKPQELSGRKRLKPGKEDKLFRKKRRSWKNAEDR
MALANKPLRRFKQEPEDELPEAPPKTRESDHSRSSSPTAGPSTEGAEGPEEKKKVKMRRK
RRLPNKELSRELSKELNHEIQRTENSLANENQQPIKSEPESEGEEPKRPPGICERPHRFS
KGLNGTPRELRHQLGPSLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISPPPDSLPLD
DGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLML
SGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTL
DVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMP
LLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHI
DLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq 3897 nt   +upstreamnt  +downstreamnt
atggcgggtccgcaaatggggggatctgcagaggatcaccccccacgaaaaagacatgca
gcagaaaagcaaaaaaagaaaacagttatatatacaaaatgctttgaatttgagtcggcc
acacagcgcccgattgaccgccagcgatacgacgagaacgaggacttgtcggacgtggag
gagatcgtcagcgtccgcggcttcagcctggaggagaagcttcgcagccagctgtaccag
ggggacttcgtgcacgccatggagggcaaagatttcaactatgagtacgtacagagagaa
gctctcagggttcccctgatatttcgagaaaaggatggactgggaattaagatgcctgac
cctgatttcacagtccgagacgtcaaactcctagtggggagccggcggcttgtggacgtg
atggatgtgaacacccagaagggcacggagatgagcatgtcccagtttgtgcgttactac
gagacgcccgaggcccagcgggacaagctgtacaacgtcatcagcctagagttcagccac
accaagctggagcacttggtcaagcgtccgactgtggtagacctggtggactgggtggac
aacatgtggccccagcatctgaaggagaagcagacagaagccacgaacgccattgcagag
atgaagtacccgaaagtgaagaagtactgtctgatgagcgtgaaaggttgtttcactgac
ttccacatcgactttggaggcacttccgtttggtaccatgttttccggggtgggaagatt
ttttggctgattcctccaacgctgcacaatttggcgctgtacgaggagtgggtgctgtca
ggcaaacagagtgacatctttctgggagaccgtgtggaacgatgccaaagaattgagctg
aagcagggctacacatttttcatcccttccggttggatccatgccgtctacacccctgta
gactctttggtgttcggcggaaacatcctgcacagctttaacgtgcccatgcagctgcgg
atctacgagatcgaggacaggacgcgggtgcagcccaaattccgttaccccttctactat
gagatgtgctggtatgtcctggagagatacgtgtactgtgtgacccagcgctcccacctc
actcaggaataccagagggagtcgatgcttattgatgccccgaggaagcccagcatagac
ggcttctcttcggattcctggctggagatggaggaggaggcctgtgatcagcagcctcag
gaggaggaggagaaggacgaggagggcgagggcagggacagggcacccaaaccgcccgcc
gatggctccacttcacccaccagcacgccctccgaggaccaggaggccctcgggaagaag
cccaaagcacctgccctgcgattcctcaaaaggactttgtctaacgagtcggaggagagt
gtgaagtccaccacattggccgtagactaccccaagacccccaccggctctcccgccacg
gaggtctctgccaaatggacccatctcaccgagtttgaactgaagggcctgaaagctctg
gtggagaaactggaatccctcccggagaacaagaagtgtgtccccgagggcatcgaggac
ccccaggcactcctggagggtgtgaagaacgtcctgaaggagcacgcggatgatgatcct
agtctggccatcactggggtccctgtggtgacttggccaaagaagactccaaagaaccgg
gctgtgggtcggcccaaggggaagctgggcccggcctccgcggtgaagttggccgccaac
cggacaacggcaggagctcggcggcgccggacgcgatgccgcaagtgcgaggcctgcctg
cggaccgagtgcggagagtgccacttctgcaaggacatgaagaagttcgggggccccggg
cgcatgaagcagagctgcatcatgcggcagtgcatcgcgccagtgctgccccacaccgcc
gtgtgccttgtgtgtggcgaggcggggaaggaagacacggtggaagaggaggaaggcaag
tttaacctcatgctcatggagtgctccatctgcaatgaaatcatccaccctggatgcctt
aagattaaggagtcagagggtgtggtcaacgacgagcttccaaactgctgggagtgtccg
aagtgtaaccacgccggcaagaccgggaaacaaaagcgtggccctggctttaagtacgcc
tccaacctgcccggctccctgctcaaggagcagaagatgaaccgggacaacaaagaaggg
caggaacctgccaagcggaggagtgagtgtgaggaggcgccccggcgcaggtcggatgag
cacccgaagaaggtgccgccggacggcctcctgcgcagaaagtctgatgacgtgcacctg
aggaagaagcggaaatacgagaaaccccaggagctgagtggacgcaagcggctcaaacct
ggcaaagaagataagcttttcaggaaaaagcggcggtcctggaagaacgccgaggaccgc
atggcgctggccaacaagcccctccggcgcttcaagcaggaacccgaggacgaactgccc
gaggcgccccccaagaccagggagagcgaccactcccgctccagctcccccaccgcggga
cccagcaccgaaggggccgagggcccggaggagaagaagaaggtgaagatgcgccggaag
cggcggcttcccaacaaggagctgagcagggagctgagcaaggagctcaaccacgagatc
cagaggacggagaacagcctggccaacgagaaccagcagcccatcaagtcggagcccgag
agcgagggcgaggagcccaagcggcccccgggcatctgcgagcgtccccaccgcttcagc
aaggggctcaacggcaccccccgggagctgcggcaccagctggggcccagcctgcgcagc
ccgccccgtgtcatctcccggcccccaccctccgtgtctccgcccaagtgtatccagatg
gagcgccatgtgatccggccaccccccatcagccccccgcctgactcgctacccctggac
gatggggcagcccacgtcatgcacagggaggtgtggatggccgtcttcagctacctcagc
caccaagacctgtgtgtgtgcatgcgggtctgcaggacctggaaccgctggtgctgcgat
aagcggttgtggacccgcattgacctgaaccactgcaagtctatcacacccctgatgctg
agtggcatcatccggcgacagcccgtctccctcgacctcagctggaccaatatctccaag
aagcagctgagctggctcatcaaccggctgcctgggctccgggacttggtgctgtcaggc
tgctcatggatcgcggtctcggccctttgcagctccagttgtccgctgctccggaccctg
gatgtccagtgggtggagggactaaaggatgcccagatgcgggatctcctgtccccgccc
acagacaacaggccaggtcagatggacaatcggagcaagctccggaacatcgtggagctg
cgcctggcaggcctggacatcacagatgcctccctgcggctcatcatccgccacatgccc
ctgctctccaagctccacctcagttactgtaaccacgtcaccgaccagtccatcaacctg
ctcaccgctgttggcaccaccacccgagactccttaaccgagatcaacctgtctgactgc
aataaggtcactgatcagtgcctgtccttcttcaaacgctgtggaaacatctgtcatatt
gacctgaggtactgcaagcaagtcaccaaggaaggctgtgagcagttcatagccgagatg
tctgtgagtgtccagtttgggcaagtagaagagaaactcctgcaaaaactgagttag

  All links  
Gene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (19)   
   RefSeq(pep) (19)   
DNA sequence (19)   
   RefSeq(nuc) (19)   
Protein domain (8)   
   Pfam (8)   
All databases (50)   

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