KEGG   Pseudomonas pseudoalcaligenes: BN5_0230
Entry
BN5_0230          CDS       T03772                                 
Symbol
rho
Name
(GenBank) Transcription termination factor rho
  KO
K03628  transcription termination factor Rho
Organism
ppse  Pseudomonas pseudoalcaligenes
Pathway
ppse03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppse00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN5_0230 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppse03021]
    BN5_0230 (rho)
   03019 Messenger RNA biogenesis [BR:ppse03019]
    BN5_0230 (rho)
Transcription machinery [BR:ppse03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BN5_0230 (rho)
Messenger RNA biogenesis [BR:ppse03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BN5_0230 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 NACHT Mor
Other DBs
NCBI-ProteinID: CDM38844
UniProt: W6RAI7
Position
232457..233716
AA seq 419 aa
MNLTELKQKPIAELLDMAEQMGLENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPNKRLTMEAGNGSTEDITGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELILDRRVSEKRVFPAINI
NKSGTRREELLTGEEELSRMWILRKLLHPMDEIAAIEFLIDKLKATKTNDEFFLSMKRK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatctgaccgaactcaagcaaaagccgattgccgaactgctggacatggccgaacaa
atgggcctggaaaacatggctcgttcgcgcaagcaggacatcatcttcgccctgctgaaa
aagcatgccaaaagcggcgaggaaatttccggtgacggcgtgctggagatcctccaggac
ggtttcggcttcctgcgcagcgccgactcttcctacctggccggccctgacgacatctac
gtctcgcccagccagatccgccgtttcaacctgcgtaccggtgacaccatcgtcggcaag
atccgcccgccgaaggaaggcgagcgttacttcgccctgctcaaggtcgacagcatcaac
ttcgaccgtccggaaaacgccaagaacaagatcctgttcgaaaacctgacgccgctgttc
cccaacaagcgcctgaccatggaagccggtaacggctctaccgaggacatcaccggccgt
gtgatcgacctctgcgcgccgattggcaagggccagcgcggcctgatcgtcgccccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcctcgaacatcacccgcaacaacccc
gagtgccacctgatcgttctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccgacccgccacgtg
caggtcgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggatgtg
gtcatcctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtcctgactggtggtgtcgacgcccacgccctggagaagcccaagcgcttc
ttcggcgccgcgcgtaacatcgaagaaggcggctcgctgaccatcatcgctaccgcgctg
gtggaaaccggctcgaagatggacgaagtgatctacgaggaattcaaaggcaccggcaac
atggagctgatcctcgatcgccgtgtttccgagaagcgcgtgttcccggccatcaacatc
aacaagtcgggcactcgtcgtgaagagctgctgaccggtgaagaagagctgtcgcgcatg
tggatcctgcgcaagctgctgcacccgatggacgaaatcgccgccatcgagttcctgatc
gacaagctgaaagcgaccaagaccaacgacgagttcttcctgtcgatgaagcgcaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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