KEGG   Pseudomonas pseudoalcaligenes: BN5_1147
Entry
BN5_1147          CDS       T03772                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
ppse  Pseudomonas pseudoalcaligenes
Pathway
ppse03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppse00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    BN5_1147 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppse03400]
    BN5_1147 (sbcB)
Enzymes [BR:ppse01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     BN5_1147 (sbcB)
DNA repair and recombination proteins [BR:ppse03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     BN5_1147 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BN5_1147 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BN5_1147 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: CDM39749
UniProt: W6RD32
Position
1238528..1239976
AA seq 482 aa
MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLV
TGIDPQRLQQQGLDEGEFMTRVHAALSAPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDLVRTAYALRPEGIEWPEEEGRVSLKLERLTQANGIDHGQAHDALSDV
RATIGLARLLRERQTKLYDFLYQLRSKQRVMDQVRLLQPVLHVSGRFSAARHYLAPVLPL
AWHPRNRNALIVCDLQADPSPLLNLDADTLRSRLYTRREALAEGELPVPLKLLHINRCPV
VAPLSVLREADRQRLQLDWSVCQRHIDVLKNEQPLWLGKLASVYREEAFAGSHDPEQQLY
DGFIGDRDRRLCEQVRAAQPDALANNKKWPFDDARLPELLFRYRARNFPASLSVAESQRW
EAFCRQRLSDPEFGAPNTLAQFYAAMESLRANCSPEQLQVLQQWQAHAQALQARLAISFV
GI
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgacttccagcattttctggtacgactacgagaccaccggtatcaatccgcgttgtgat
cgtccgctgcaggtggcgggcattcgtaccgacgaggcgctgaacgagatcggcgagccg
ctgaacatctattgccggcccagcgatgacatcctgccgcacccggccgcctgcctggtc
accggtatcgacccgcagcgtctgcaacaacaggggctggacgagggggagttcatgacc
cgtgtgcatgccgcgttatcggcgcccggcacctgtggtgcgggatacaacagcctgcgc
ttcgatgatgaggtgacgcgttacagcctgtatcgcaacttcttcgacccttacgcgcgc
gaatggcagggcggcaacagccgctgggatctgatcgatctggtacgcactgcttacgca
ctgcggcccgaaggcatcgaatggcctgaggaggaggggcgcgtatcgctcaagctggag
cggctgacccaggccaacggcatcgatcacggccaggcgcacgatgcgctgtccgacgta
cgcgccaccattggcctggcacggctgctgcgcgagcggcaaacaaaactgtacgacttc
ctctatcagctgcgcagcaagcagcgggtcatggatcaggttcgcctgctgcagccagtg
ctgcacgtttccgggcgtttctcggcggcacgtcattatctggcgccggtcctgccgctg
gcctggcatccgcgcaatcgcaacgcactgatcgtctgtgatctgcaggccgatccatcg
cctctgctgaatctggatgccgacacgctgcgcagtcgcctctacacgcggcgtgaggcg
cttgccgaaggcgagttgccggtaccgctgaaactgctgcatatcaaccgctgtccggtg
gtggcgccgctgtcggtgttgcgtgaggcggatcggcagcgtttgcagttggactggtcg
gtttgtcagcgccatattgacgtgttgaagaatgaacagccattgtggctgggcaagttg
gcgagtgtttaccgagaagaggcctttgcaggcagtcacgatcccgagcaacagctgtac
gatggttttatcggtgatcgtgatcgtcgtttgtgtgagcaggtacgtgccgcacaacct
gacgcattggccaacaataaaaaatggccgttcgatgatgcacgactgcccgagttgttg
tttcgttatcgggcgcgcaattttccggccagtctgtccgtcgctgagtctcagcgctgg
gaagcattctgtcggcagcgtttgagtgatccagagttcggtgcacccaataccctggcg
caattttatgcggcaatggagtcgctgcgggctaactgcagccccgagcaattgcaagtg
ttgcagcaatggcaggctcatgcgcaggcgttgcaggcgcgtttggctataagtttcgta
gggatttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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