KEGG   Pseudomonas psychrophila: G5J76_10425
Entry
G5J76_10425       CDS       T06988                                 
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ppsh  Pseudomonas psychrophila
Brite
KEGG Orthology (KO) [BR:ppsh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppsh03032]
    G5J76_10425 (topA)
   03400 DNA repair and recombination proteins [BR:ppsh03400]
    G5J76_10425 (topA)
Enzymes [BR:ppsh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     G5J76_10425 (topA)
DNA replication proteins [BR:ppsh03032]
 Prokaryotic type
  DNA Topoisomerases
   G5J76_10425 (topA)
DNA repair and recombination proteins [BR:ppsh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      G5J76_10425 (topA)
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_4
Other DBs
NCBI-ProteinID: QIE32633
Position
2278960..2281587
AA seq 875 aa
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKAQKQLISRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSRPGELDINRVNAQQARRFLDR
VVGYMVSPLLWAKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGAK
VRFDVAREKGEAFKPLNEAQAMAALEKLKASNYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGYGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVEMARTYIEGEFGADYLPPAPN
VYSSKEGAQEAHEAIRPSDVNMHPSKLSGMERDAERLYELIWRQFVACQMLPAKYLSTTV
SVAAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVLKLIELDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSDLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAAAPDGGMRANQPVMT
DIPCKECGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
LGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNAECKNTRKLLKSGEAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVEGKPTGWRAFYDGKSWKVEDKRKEKDA
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggtaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagaaccggctgccaagcgtggcaaggcagcggcaggcgaa
gcgccggccctgtcgccaaaagagaaggctcaaaagcagctgatctcgcgcatgggcgtc
gatcccgaacatggctggaaagccaagtacgagatcctgcccggcaaggaaaaggtcatc
gaagagctgcgccggcttgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggagaagccattgcctggcacctgcgcgaagccatcggcggtgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgattcaggaagctttctccagg
cctggcgaactggatatcaaccgcgtcaacgcccagcaggcgcgtcgtttcctcgatcgc
gtggtgggctacatggtttcgccactgctgtgggcaaaagttgcccgtggcctgtcggca
ggccgtgtgcaatcagtagccgtaaagctggtggttgagcgtgagcgcgaaattcgtgcc
tttaaccctgaagagtactgggaaattcacgccgaccttggcactgccaagggcgccaaa
gtgcgtttcgacgtcgcccgtgaaaaaggcgaggcgttcaagccgctgaacgaagctcag
gccatggctgcgctggagaagctcaaggcttccaattacagcatcgtcaagcgtgaagac
aaaccgaccagcagcaagccgtcggcgccattcattacctccaccctgcaacaggccgcg
agcaatcgcctggggtacggggtgaagaaaaccatgatgatggctcagcgcttgtatgaa
gcgggctacatcacgtacatgcgtaccgactccaccaatctgtcggccgatgccgtcgag
atggcgcgcacctacattgaaggtgagttcggcgcagactacctgccgccggccccgaac
gtgtatagcagcaaggagggtgcacaggaggctcacgaagcgattcgtccttcagatgta
aacatgcacccaagcaagctgtcgggcatggagcgcgacgctgagcgcctttatgagctt
atctggcgccagttcgtggcttgtcagatgctgcctgccaaatacctgtcgaccaccgtc
agcgtcgcggctggcgattttgagctgcgagccaagggccgcatcctgaaattcgacggt
tacacccgcgtgatgccacaaattgccaagccgggcgacgacgacgtactgccagatatg
gcacagggcgatgtgctgaaactgatcgagcttgatccaagccagcatttcaccaagcca
cctgcgcgttactccgaagccagcctggtaaaagagatggaaaagcgcggtattggtcgc
ccatcgacctatgcagcgatcatttcgactattcaggatcgtggttacgtggcgctgcat
aaccgccgcttctactccgaaaaaatgggcgatatcgtcaccgagcgcttgtccgagagt
ttctctgatctgatggactacggcttcactgccggcatggaagagaacctcgatgacgtg
gcgcaaggcgagcgtgactggaaaaacgtgctggacgagttctacggcgacttcaagaaa
aagctcgaagtagccgctgcgccggatggcgggatgcgtgccaatcagcctgtgatgact
gatattccgtgtaaagaatgtggtcgtccaatgcagattcgcacggcttcgactggcgtg
ttcctggggtgctcgggttacagcctgccgcctaaagagcgttgcaaggccacggtcaat
ctggtgccaggcgacgaaatcgcagcggacgatgaaggcgagtccgaatcgctggtgttg
ttgggcaagcaccgttgcccgatttgcagcacggccatggatgcttacctgctggatgag
aagcacaagctgcacatctgcggtaacaatccggattgcgtcggctatgaaattgaagaa
ggcaactaccgtatcaagggctatgaaggtccgagcctggagtgcgacaagtgcggcagc
gagatgcagctaaaaaccggccgcttcggcaagttcttcggttgcaccaacgccgagtgt
aaaaacacccgtaaattgctgaagagtggtgaagccgcaccgccgaaaatggacccggtg
aaaatgccggagcttaaatgcgagaaggttaacgacacgtatatcctgcgtgacggtgct
tcagggttgttcctggccgcgagccaatttccgaaaaaccgtgagacccgtgctccgttg
gtgatcgaaattgtgccgcacaaggacgagatcgatcccaagtatcacttcctgtgtgaa
gcgccgaagaaagaccctgatgggcgtcctgcggtgattcgctacagtcgcaaaaccaaa
gagcagtacgtgcagactgaagttgaaggcaagccgactggctggcgtgcgttctacgac
ggtaagagctggaaggttgaagacaagcgtaaagaaaaagacgcttga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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