KEGG   Pseudomonas psychrophila: G5J76_22655
Entry
G5J76_22655       CDS       T06988                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
ppsh  Pseudomonas psychrophila
Pathway
ppsh02020  Two-component system
ppsh02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:ppsh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    G5J76_22655
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    G5J76_22655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppsh03021]
    G5J76_22655
Transcription machinery [BR:ppsh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     G5J76_22655
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR HTH_21 TrmO_C
Other DBs
NCBI-ProteinID: QIE34903
Position
5001592..5003085
AA seq 497 aa
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD
PLADNIEQKPNTDVQEPTYQESAQTVDNLEDGDWGDRIPNELPVDTAWEDVYQTSASSLP
SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIGVTLIDCINNQGYLDETLEEI
LEAFDPELDIELDEIEAVLHRIQQFEPSGIGARNLGECLLLQLRQLPAKTPWLSEAKRLV
TDYIDLLGARDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESSEAEYVVPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq 1494 nt   +upstreamnt  +downstreamnt
atgaaaccatcgctagtcctgagaatgggccagcagctgactatgacacctcagctgcaa
caggccatccgcctgctccaattgtcgaccctcgacctgcaacaggaaatccaggaagcc
ctggagtccaatccgatgctcgaacgccaggaagaaggcgacgacttcgacaatgcagac
cccttggccgacaacatcgagcaaaaacccaataccgacgttcaggagcccacctatcag
gagtccgcacagactgtagacaacctggaagacggcgactggggcgaccgcatccccaac
gagctgcctgtggacacggcctgggaggatgtttatcagaccagcgctagcagcctgcca
agcaacgacgatgacgagtgggacttcaccacccgtacgtctgctggcgagagtctgcaa
agccacttgctatggcagttgaaccttgcaccgatgtccgacaccgaccgactgatcggt
gtaaccctcatcgactgcatcaataaccagggctacctggacgaaaccctcgaagagatt
ctcgaagcgttcgaccctgagctggatatcgaactcgacgaaattgaagccgtattacac
cgcattcagcaattcgaaccctccggcattggtgctcgcaatctgggcgagtgcctgctg
ctgcaattgcgccagctcccggccaagacgccgtggctgagcgaagccaaacgcctggtc
acggattacatcgacttgctgggcgcacgcgactacagccagctcatgcgccgcatgaag
ctcaaagaagacgagctgcgccaggtcatcgaactggtacaaagcctcaacccgcgcccc
ggctcgcaaatcgagtccagcgaagccgagtacgtcgttccggacgtgatcgtgcgcaag
gataacgaacgctggctggtagaactcaaccaggaatcagtgccacgcctgcgggtgaac
ccgcaatacgcaggcttcgtgcgccgtgccgacaccagtgccgacaacacctttatgcgc
aaccagctgcaagaagcgcgctggtttatcaaaagcctgcagagccgcaacgaaaccctg
atgaaagtggcgacccaaatcgtcgagcatcagcgcggttttctggagtatggcgacgag
gccatgaagccactggtactgcatgacatcgcagaagcagtgggcatgcacgaatccacc
atttcgcgtgttaccacacaaaaattcatgcataccccgcgtggtatttatgagctgaag
tattttttctccagccacgtcagcacctctgaaggcggcgaatgctcctccactgccatc
cgtgccatcatcaaaaaactggttgccgctgaaaatcagaaaaagccgttgagtgacagc
aagatcgctggtttactggaggcacaaggtattcaggtagcccgtcgcaccgtcgccaag
taccgcgaatccctagggatagcgccttcgagcgaacgcaagcgtttgatgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system