KEGG T05074: BJP27

Pseudomonas psychrotolerans: BJP27_02960

Entry

BJP27_02960       CDS       T05074

Name

(GenBank) ATP-dependent RNA helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

ppsl Pseudomonas psychrotolerans

Pathway

ppsl03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:ppsl00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BJP27_02960
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppsl03019]
    BJP27_02960
   03009 Ribosome biogenesis [BR:ppsl03009]
    BJP27_02960
Enzymes [BR:ppsl01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BJP27_02960
Messenger RNA biogenesis [BR:ppsl03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BJP27_02960
Ribosome biogenesis [BR:ppsl03009]
Prokaryotic type
  rRNA helicases
   BJP27_02960

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII HEM4 TrkA_N TDP-43_C

Other DBs

NCBI-ProteinID:

APQ10516

Position

complement(661881..663575)

AA seq 564 aa
MTQDTSNFAALNLNPAILAAIKAVGYEEPSPIQSQSIPVILAGHDMIGQAQTGTGKTAAF
ALPLLSKLDPSRREPQILVLVPTRELALQVATACETYSTEMPGVKVVALYGGAPMGPQLK
SLRMGAQVLVATPGRLCDHLRRDDNLLATVQHLVLDEADEMLKLGFMDDLEFIFEAMPES
RQTVLFSATLPPSIRAIAERHLKEPQHVRIAAKTQTVARIEQAHLMVHADQKPASVLRLL
EVENFDALIAFVRTKQATLDLAELLERQGYRVSALNGDMPQAQREKVIESLKDGSLDIVV
ATDVAARGLDVARITHVLNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQRVGEIRLPDAEAVLEARISRLADGVGSLLADADATHGALRQELCERLQCDPSTL
AAALLAKLTSGRALDIESVRREQPLTPGAGRSDRPRTERGDRPERGERGERPDRGERRPM
QPLPEGRVRCRTALGARDGIAAKNLLGAIINEGGMDREAIGRIQIRDSFSLVELPEEGLE
RLLTKLKDTRVAGKALRLRRYRED

NT seq 1695 nt +upstreamnt +downstreamnt
atgacccaggacaccagcaatttcgctgcgctcaatctcaatcccgccatcctggccgcc
atcaaggccgttggctacgaagagccgtcgcccatccagtcacagtcgatcccggtgatc
ctcgccggccatgacatgatcggccaggcccagaccggtaccggcaagaccgcagccttc
gccctgccgctgctgtcgaagctcgatccgtcccgccgcgaaccccagatactggtgctg
gttcccactcgggaactggccctgcaggtagccaccgcctgcgaaacctattccaccgag
atgcccggcgtgaaagtcgtggcgctctacggcggcgcgcccatggggccgcagctgaag
tccctgcgcatgggtgcccaggtactggtcgccacccccggtcgtctgtgcgatcacctg
cgtcgcgacgacaacctgctggccaccgtccagcacctggtgctcgacgaagccgacgag
atgctcaagctgggcttcatggatgacctcgaattcatcttcgaagccatgccggaatcc
cgccagaccgtgctgttctcggcgaccctgccgccgtcgatccgcgccatcgccgagcgt
catctgaaggagccgcagcacgtccgcatcgcggccaagacccagaccgtcgcccgcatc
gagcaggcccacctgatggtccacgccgaccagaagccggcctcggtgctgcgcctgttg
gaagtggagaacttcgacgccctgatcgccttcgtccgcaccaagcaggcgaccctggac
ctggccgagctgctcgagcgccagggctatcgcgtcagcgccctgaacggcgacatgccc
caggcccagcgtgagaaggtcatcgagtcgctcaaggatggctccctggacatcgtggtc
gccaccgacgtggccgcccgtggtctggacgtggcgcgcatcacccacgtcctgaacgtg
gacatgccctacgatccggagtcctacgtgcaccgcatcggccgtaccggccgtgccggt
cgtgaaggccgcgcgctgctgctggtcaccccgcgtgagcgccgcatgctgcaggtcatc
gagcgcgtcaccggtcagcgcgtgggcgagatccgcctgcccgacgccgaagccgtgctg
gaagcccgtatttcccgcctggccgatggcgtgggctcgctgctggccgatgccgatgct
acccatggcgcgctgcgtcaggaactctgcgagcgtctgcagtgcgatccttcgaccctg
gctgccgcgctgctggccaagctgacctccgggcgtgccctggacatcgagtccgtgcgc
cgtgagcagccgctgacccccggcgccggccgcagcgaccgtccgcgtaccgagcggggc
gatcgtcctgagcgtggcgagcgcggtgagcgtccggatcgtggcgagcgtcgtccgatg
cagccgctgccggaaggtcgcgtccgctgccgtaccgccctgggcgcccgcgacggtatt
gccgccaagaacctgctcggcgccatcatcaacgagggtggcatggatcgcgaggccatc
ggccgcatccagatccgtgactccttcagcctggtggaactgcccgaggaaggcctggag
cgtctgctgaccaagctcaaggatacccgcgtcgccggcaaggccctgcgcctgcgtcgt
tatcgcgaggattga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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