KEGG   Pseudomonas versuta: AOC04_22630
Entry
AOC04_22630       CDS       T04081                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ppsy  Pseudomonas versuta
Pathway
ppsy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ppsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AOC04_22630
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppsy03021]
    AOC04_22630
   03400 DNA repair and recombination proteins [BR:ppsy03400]
    AOC04_22630
Enzymes [BR:ppsy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AOC04_22630
Transcription machinery [BR:ppsy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AOC04_22630
DNA repair and recombination proteins [BR:ppsy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AOC04_22630
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 DUF3150 Biotin_lipoyl
Other DBs
NCBI-ProteinID: ALE90822
Position
5043092..5047291
AA seq 1399 aa
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFLGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVSGTRIVDTTVGRALLFQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIAAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKEKVIDRHGVEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDEIIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRFGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGCLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGVDGKDLLLPGTDVPAQYFLPANALVGVADGAEIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGTDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSTFIKGDQMELTHVLVENERLGNEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREADKPLR
VSASEVEAALTEALNSSGN
NT seq 4200 nt   +upstreamnt  +downstreamnt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaaa
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaaa
atctttggcccggttaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgcggtgtgatctgcgagaagtgtggcgttgaagtcgcactggccaaggtccgtcgcgag
cgcatggctcacatcgaactggcatcgccggttgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggtttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccgggcatgaccactcttgagaaaggtcagctgctg
aacgatgagcagtacttcgaagcgctagaagagttcggcgacgactttgatgcccgtatg
ggtgctgaagctgtccgtgaactgctgcacgctatcgatctggaacacgagattggccgt
ctgcgcgaagaaattccgcaaaccaactccgaaaccaaaatcaagaaactgtccaagcgc
ctgaagttgatggaagccttcctgggctccggcaaccttcctgagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtcctttggttccgctggatggtggtcgtttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgcctgcttgatctgtccgctccggacatcatcgtgcgtaacgaaaagcgtatgttgcaa
gaagcggtcgacgcattgctcgacaacggccgtcgtggtcgcgctatcactggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactcgggtcgttcggtaattaccgtaggtccaacc
ctgcgtctgcaccagtgcggtctgccgaaaaaaatggctctcgagctgttcaagccgttc
atcttcggcaagcttgaaatgcgcggtctcgcgaccaccatcaaagcagccaagaaaatg
gttgagcgcgaattgccagaggtttgggacgttctcgcagaagtcattcgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcacccgttggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtattcgcggatctgcaagaagttgaccgtgtattccgtgccggc
gaagccgcactgcatgccaaggttaaagtgcggatcaacgaaaccgtcaatgaccgtgat
ggtggcagcgtgagcggcacccgtatcgtcgacactactgtcggccgtgcgctgttgttc
caggttgtgcctaaaggtctgtcgtacgatgtcgtcaacctgccgatgaagaaaaaggcg
atctccaaactgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgattttc
gctgaccagttgatgtacaccggttttgcttactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatccctgatgaaaaagcccgcatcatcgcggctgcaaccgatgaa
gtgaaagagatcgaaagtcagtacgcctcgggcctggtaacacagggcgagaagtacaac
aaagtaatcgacctttggtcgaaagctaacgacgaagtctccaaggcaatgatgtcgaac
ctctcgaaagagaaggttattgaccgtcacggcgttgaggttgagcaagagtcgttcaac
tcgatgtacatgatggccgactccggcgcacggggttctgcagcgcagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggatggctccatcattgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctctactcacggtgctcgt
aagggtctggcggataccgccttgaaaactgctaactccggttacttgacgcgtcgtctg
gtagacgttgcgcaggatctggttgtgactgaagtcgactgcgggaccgaacacggtctg
ctgatgactccgcacattgaaggcggtgacgttgttgagccgttgggtgagcgcgtactg
ggtcgagtaatcgcccgtgacgtattcaagccgggtaccgatgaaatcatcgttcctgct
ggcaccctggtcgacgagaagtgggttgaattcatcgagctgaacagcattgacgaagta
atcgtacgctcgccaatcagctgcgaaacccgcttcggtatctgtgccaagtgctacggt
cgcgatctggcccgtggtcaccaggtgaacatcggtgaagctgtcggcgtaatcgctgcc
cagtcgatcggtgagccgggtacacagctgaccatgcgtacgttccacattggtggtgcg
gctagccggacctctgctgctgacagcgttcaggtgaagaatggcggtactgtccgtctg
cacaacctgaagcacgttgagcgggtagatggttgcctggtagcagtatcccgttccggt
gagctggccatcgctgatgactacggtcgtgagcgcgagcgctacaagctgccgtacggt
gccgtgatttcggtcaaagaaggtgacaaggtcgacgctggctctatcgtcgccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtgcttgatgccaaagaccgtccagctgccggcaaggacattcgtccagccgtcaagatg
gttggtgttgatggcaaggacctgctgttgccaggtaccgacgtaccggctcagtacttc
ctgccggcgaacgccctggtcggtgtagcggatggtgcggaaatcgcgatcggtgacgtt
atcgctcgtattccgcaagaaacttcgaaaactcgagacatcaccggtggtctgccacgg
gttgctgacttgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggtcattactccgaac
gacggtactgatccgtacgaagagctgattccaaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtttgctgggtgtgagtgcgttggccaagtacatcgttaacgaaattcaagacgtt
taccgtctgcaaggcgtaaaaatcaacgataagcacatcgagacgattcttcgtcagatg
ctgcgtaaagttgagattgccgagtctggcgattccaccttcatcaagggcgaccagatg
gagttgacgcatgtactggtcgagaacgagcgcctgggcaacgaagataaattcgtgtcc
aagttcactcgcgttctgttgggtatcaccaaggcgtcgttgtcgactgagtcgtttatc
tccgcggcctctttccaagagactacccgcgtactgaccgaagcagcggttaccggcaag
cgcgattacctgcgtggcctgaaagaaaacgtggtcgtgggtcgtttgatcccggctggt
accggtctggcataccacagcgagcgcaagcgtcgtcgtgaggctgacaaaccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcactgaactcgagcggtaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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