KEGG   Pseudomonas putida S16: PPS_0479
Entry
PPS_0479          CDS       T01570                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
ppt  Pseudomonas putida S16
Pathway
ppt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PPS_0479
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppt03400]
    PPS_0479
DNA repair and recombination proteins [BR:ppt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PPS_0479
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PPS_0479
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N nSTAND1 AAA_29 AAA_16 AAA_23 RsgA_GTPase BCA_ABC_TP_C AAA_33 DnaJ_CXXCXGXG Viral_helicase1 nSTAND3 APS_kinase cobW Zn-ribbon_8 AAA_21 AAA_25
Other DBs
NCBI-ProteinID: AEJ11064
UniProt: F8G149
Position
complement(554574..557408)
AA seq 944 aa
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC
PDHDIPLEAQTISQMVDLVLERPEGSKLMLLAPVVRERKGEHLAVFDELRAQGFVRARVN
GKLYELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
PGEETIFSARFACPVCGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLVNAELT
LAEGAIRGWDRRNVYYFQMLGSLAAHYGFSLEEPFGQLSAEHQKVILQGSGKQSVDFKYL
NDRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRREARHV
WVGEKTLPAVTNLPIGEASNYFGELTLTGRRGEIAAKILKEICERLQFLVNVGLDYLTLD
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLNHLRDLGNTV
IVVEHDEDAIRLADYVVDIGPGAGVHGGQIVAEGSPQEVMEHPDSLTGKYLSGRKKIVVP
AKRTPRNKKLQLKLKGARGNNLQNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLAATA
LNGSSSLEAAPHASMDGLQHLDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFSGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYK
GKNIHEVLEMTIEDAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLS
RELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWL
VDLGPEGGSKGGQIIACGTPEELSTMKQSYTGHYLKPLLERDRA
NT seq 2835 nt   +upstreamnt  +downstreamnt
gtggacaagatcctgattcgtggggcacgtacccacaacctgaagaacatcgacctgacc
ctgccccgggacaagctgatcgtgatcaccggcctgtccggttccggaaagtcgtccctg
gcgttcgacaccctgtacgccgaaggccagcgccgctatgtggaatcgctgtcggcctac
gcccggcagttcctgtcgatgatggaaaagcccgacgtcgacaccatcgaaggcctgtcg
ccggccatttccatcgagcagaagtcgacctcgcacaacccccgctccacggtcggcacc
atcaccgaaatctacgactatctgcgcctgctgtacgctcgcgtgggtaccccacgctgc
ccggatcacgatatcccgctggaagcgcaaacgatcagccagatggtcgacctggtgctg
gagcgaccggaaggcagcaagctgatgctgctggcgccggtggtgcgcgagcgcaagggc
gagcacctggcggtattcgacgagctacgggcccagggctttgtgcgcgcccgggtcaac
ggcaagctctacgagctcgacgaactgcccaagctggacaagcagaaaaaacacagcatc
gatgtggtggtggaccgtttcaaggtccgcgccgacctgcaacagcgcctggccgagtcg
ttcgagaccgcgctcaagctggccgacggcatagccctggtagcgccgatggatgacgag
ccaggcgaggagacgatcttctccgcgcgtttcgcctgcccggtctgtggccatgccatc
agcgagctggagccgaaactgttctccttcaacaaccccgccggcgcctgcccgacctgc
gatggactgggggtgaagcagttcttcgacaccaagcgcctggtcaatgccgagctcacc
ttggccgaaggcgcgatccgcggctgggaccggcgcaacgtgtactacttccagatgctc
ggctcgctggccgcgcattacggcttcagcctggaggaaccattcggccagctttcggcc
gagcaccagaaggtgatcctgcagggcagcggcaagcagagcgtcgacttcaagtacctc
aacgaccgtggcgacatcgtcaagcgctcgcacccgttcgaaggcatcgtgccgaacctg
gagcgtcgctaccgcgagaccgagtcggccaccgtgcgcgaagaactggccaagttcctc
ggcacccagccgtgccccgattgccgcggcacccgcctgcgccgtgaggcaaggcatgtg
tgggtgggcgaaaaaacgctaccggcagtgaccaacctgccgatcggtgaagccagcaac
tacttcggcgagctgactctgaccggacgccgtggcgagattgcggcgaagatcctcaag
gaaatctgcgagcgcctgcagttcctggtgaacgtcggtctcgactatctcaccctggac
cgcagcgctgataccctatccggtggcgaagcgcagcgtatccgcctggccagccagatc
ggtgctggcctggtgggagtgatgtacatcctcgatgagccgtccatcggccttcatcaa
cgtgacaatgaccgcctgctggccaccctcaaccacctgcgcgacctgggcaacacggtg
atcgtggtggaacacgacgaagacgccatccgcctggctgactacgtggtggacatcggc
cctggggccggcgtgcacggcggtcagatcgtcgccgaggggtcgccgcaggaagtcatg
gagcaccccgactcgctgaccggcaagtacctgtcagggcgcaagaagatcgtagtgccg
gccaagcgcacgccgcgcaacaagaagctgcaactcaagctcaagggcgcgcgtggcaac
aacctgcaaaacgtcgaccttgaaatcccgatcggcctgctgacctgcgtgacgggggtg
tccggttcgggcaagtcgacactgatcaacaacaccctattcccactggccgcgaccgcc
ctgaatggctcaagcagcctggaagcggcgccgcatgccagcatggatggcctgcagcac
ctggacaaggtagtggacatcgaccagagcccgatcggccgcacccctcgctcgaacccg
gcgacctacaccggcatcttcacgccgatccgcgagctgttctccggtgtgccggaatcg
cgttcgcgcggctatggtccggggcgtttctcgttcaacgtcaagggaggccgttgcgag
gcctgccagggcgatggcctgatcaaggtggagatgcacttcctgccggatatctatgtg
ccgtgcgacgtgtgcaagagcaagcgctacaaccgcgaaaccctggagatcaagtacaag
ggcaagaacatccacgaggtgctggaaatgaccatcgaggatgcccgcgagttcttcgac
gcagtgccggcgctggcgcgcaagctgcagacgttgatggatgtggggctgtcatacatc
aagctgggccagtcggcgaccacgctgtcgggcggtgaggcacagcgagtgaagctgtcg
cgcgagctgtccaagcgtgataccggcaagaccttgtacattctcgacgagccgaccacg
ggcctgcactttgccgatattcagcagttgctggacgtcctgcatcgcctgcgcgaccac
ggcaataccgtggtggtgatcgagcacaacctggatgtgatcaagaccgcggattggctg
gtggatctggggccggagggtggttcgaaaggcgggcagatcattgcctgcggtacgccg
gaagaactgagtacgatgaagcagtcgtataccgggcactacctgaaaccgttgctggag
cgggatcgggcgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (27)   

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