KEGG   Pseudomonas putida KT2440: PP_0448
Entry
PP_0448           CDS       T00114                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ppu  Pseudomonas putida KT2440
Pathway
ppu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ppu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PP_0448 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppu03021]
    PP_0448 (rpoC)
   03400 DNA repair and recombination proteins [BR:ppu03400]
    PP_0448 (rpoC)
Enzymes [BR:ppu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PP_0448 (rpoC)
Transcription machinery [BR:ppu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PP_0448 (rpoC)
DNA repair and recombination proteins [BR:ppu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PP_0448 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23
Other DBs
NCBI-ProteinID: AAN66078
UniProt: Q88QP1
Position
541761..545960
AA seq 1399 aa
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVIVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDAAGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSEPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLASEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq 4200 nt   +upstreamnt  +downstreamnt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtaatctgcgagaagtgcggcgttgaagttgccctggcgaaggttcgtcgtgag
cgcatggcgcacatcgagctggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgagcgcgtgctctac
ttcgagagctatgtcgttatcgacccgggcatgactaccctggaaaagggccagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgatgcccgtatg
ggggccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggccgc
ctgcgcgaagaaattccgcagaccaactcggaaaccaagatcaagaagctttccaagcgt
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtcctgccagtgctgccgccggacctgcgtccgctggttccgctggatggtggccgtttc
gcgacttccgacctgaacgacctgtatcgccgggtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggttgacgctctgctggacaacggccgtcgtggtcgcgccatcactggctcgaac
aagcgtccgctgaagtccctggccgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgttctcgctgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaacccgta
ctgatcgaaggtaaggctattcagctgcacccgctggtctgtgctgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgggaagccatcaatgcc
aagggcgaaggtcgcgtgttcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagccgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgat
ggctcggtggtcaagaacacccgcatcgttgacaccaccgtcggccgtgcgctgctgttc
caggttgtgccggcaggtctgccgtatgacgtggtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgttatcttc
gccgaccaactgatgtacaccggtttcgcatactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaacgctaccgatgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactcgggtgcgcggggttccgcagcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggttccatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgtacttcagtacttcatctcgactcacggtgctcgt
aagggtctggcggataccgcactgaaaaccgctaactccggttacctgactcgtcgtctg
gtggacgttgcccaggatctggtagtgaccgagatcgactgcggcaccgatcagggcctg
gtgatgacgccacacatcgaaggcggcgacgttgtagagccactgggtgagcgtgtattg
ggtcgtgtcatcgcccgtgacgtattcaagccaggcaccgaggacgttatcgttccggcc
ggtaccttggtcgacgagcagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcaactgcgaaacccgctacggcatttgcgccaagtgctacggt
cgtgatctggctcgtggtcaccaggtgaacatcggtgaggctgtcggcgttatcgctgcc
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggttaagaatggcggtatggtgcgtctg
cacaacctgaagcaggttgagcgtgccgacggtaacctggttgccgtatcgcgttcgggt
gagttggcgattgctgacgagttcggtcgtgagcgtgagcgctacaagctgccttacggt
gcggtgatttcggtcaaggaaggtgaaaaggtcgaagctggcgccatcgtcgccaagtgg
gacccacacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgtcagaccgacgaactgaccggcttgaccaacattgaa
gtactggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccggcaatcaagatg
gtcgatgctgcaggcaaggatctgtacctgccaggtactgacgtacctgcccagtacttc
ctgccggccaacgcccttgtcggtgtggctgacggtgctcagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagagacgtcgaagacccgtgacattaccggtggtctgccacgc
gttgccgacctgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcattcggtaaagagaccaagggcaagcgtcgcctggtgatcactccgacc
gacggtagcgaaccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggtgaacaggtaaaccgcggtgaagttatctccgacggcccgagcgatccgcatgacatc
ctgcgtctgctgggtgtgagtgcgctggcgaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccattctgcgtcagatg
ctgcgcaaggttgagatctccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgacccaggtgctggtagagaacgagcgtctcgctagcgaggacaagttcatctcc
aagttcacccgagtgctgctgggtatcaccaaggcctcgctgtccaccgagtcgttcatc
tccgcggcttccttccaggaaacaacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
actggtctggcctaccacagcgagcgcaagcgtcgccgtgatgccgacaaaccgctgcgt
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaattccagcggtaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system