KEGG   Pseudomonas putida HB3267: B479_19640
Entry
B479_19640        CDS       T02389                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
ppuh  Pseudomonas putida HB3267
Brite
KEGG Orthology (KO) [BR:ppuh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ppuh03016]
    B479_19640
Enzymes [BR:ppuh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     B479_19640
Transfer RNA biogenesis [BR:ppuh03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    B479_19640
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC RNAseD_HRDC_C
Other DBs
NCBI-ProteinID: AGA74820
Position
complement(4353204..4354337)
AA seq 377 aa
MAIEIHWIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL
LIGNWQPLAELLDDSGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGY
SRLVQDVLGIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVLRPRLSDDKYAWV
LEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNRDVPRNRIL
KEHSLWPMAKSQPSNLSALAKIDEMHPRTIRQDGEFLIQLIKRAASLPAEQWPQALPEPL
PIEAAGILKQLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWRRE
RMGQALLDSLAGAGETR
NT seq 1134 nt   +upstreamnt  +downstreamnt
gtggccatcgaaatacactggatccgtgacgaccagagcctggccgaacactgccgcgac
tggcaccagctgccctttgtcgccgtcgataccgaattcatgcgggtcgacaccttctac
ccgaaagccgggctgatccagatcggcgatggccagcgtgccttcctgatcgacccgttg
ctgatcggcaactggcaacccctggccgaactgctggatgacagcggtgtggtcaaggta
ctgcacgcctgcagcgaagacctcgaagtgctgttgcgcctgaccggcaagctgccacag
ccgctgttcgacacccaactggcggccggttatctgaacctggggttctccatgggttat
tcgcgcctggtgcaggatgtgctgggtattgacttgcccaagggcgaaacccgctccgac
tggctgcagcgtccgctctcggaaacccaggtcagctatgccgccgaggatgccgtgcac
ttggccgagctgttcaccgtgttgcgcccgcgcctgagtgacgacaagtacgcctgggtg
ctggaggacggcgccgagctggtggccgcattgcgccgcgaagtcgagcccgaaagcctg
taccgcgacgtcaagctggcctggaagctggccccccagcaactggcagtgctgcgtgag
ctgtgtgcctggcgcgagcgtgaagcgcgcaaccgcgacgtaccgcgcaatcgcatcctc
aaggagcactcgctgtggcccatggccaagagccagccgagcaacctgtcggcgctggcc
aagatcgacgagatgcatccgcgcaccattcgtcaggacggtgagttcctcatccagctg
atcaagcgtgccgccagcctgccagccgagcaatggccacaggccttgcccgagcccttg
ccgatcgaggctgcaggtatcctcaagcagctgcgtgccatcggccaggccgaaggtgag
cgcctgggcattgcccccgagctgatgctgcgcaaaaaagccctggaagcgctgctcaag
agcggctaccccaatggcccctatcaattgcccgattcgctgcgcggctggcgccgtgag
cgcatgggccaggccctgctggacagcctcgcaggcgccggagagacccgatga

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