KEGG   Pandoraea pulmonicola: RO07_08475
Entry
RO07_08475        CDS       T03553                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
ppul  Pandoraea pulmonicola
Brite
KEGG Orthology (KO) [BR:ppul00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ppul03016]
    RO07_08475
Enzymes [BR:ppul01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     RO07_08475
Transfer RNA biogenesis [BR:ppul03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    RO07_08475
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2
Other DBs
NCBI-ProteinID: APD13710
UniProt: A0A378Z5B8
Position
complement(5859112..5859696)
AA seq 194 aa
MRLFLALWPGQGVRAQLHEWAASAHAECGGRVLRAQTLHLTLAFLDEVDPARLPVLFGLM
QRTPLAPFSLTFDHLGYWSDRKIVWAGAPGVPENLMATRDALLSQWRATGARVVTQSFRP
HVTLLRHARRAPADPYPRPLVWHCDGYVLVHSVRTPRGPHYRVLAEHRGTPPEGFFMTPP
QKSTIPASQYGIVG
NT seq 585 nt   +upstreamnt  +downstreamnt
atgcgactcttccttgccttgtggcccgggcagggcgtgcgtgcgcagcttcacgagtgg
gctgcatcggcccatgcggaatgcggcggccgtgtgctgcgcgcccagaccctgcacctg
acgctggcctttctcgacgaagtcgatcccgcccgcctgcccgtgctgttcgggctgatg
caacgcacaccgctcgcacctttctcgctcacgttcgatcatctcggctattggtcggat
cgcaagatcgtctgggcgggcgcacctggcgtgccggagaatctcatggccacccgcgac
gcgctgctctcgcaatggcgcgccaccggcgcccgggtcgtgacgcagtcgttccgtccg
catgtcacgctgctgcgtcatgcgcgtcgcgcaccggccgatccctacccgcggccgctg
gtctggcattgcgacggctatgtgctcgtgcattcggtacgaacgccgcgcgggccgcac
tatcgcgtgctcgccgagcatcgcggtacgcctcccgagggctttttcatgacgccgccc
cagaaatcgacaatccccgcatcgcaatacggtatagtcggatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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