KEGG   Pseudomonas putida NBRC 14164: PP4_49600
Entry
PP4_49600         CDS       T02707                                 
Symbol
hfq
Name
(GenBank) Hfq protein
  KO
K03666  host factor-I protein
Organism
ppun  Pseudomonas putida NBRC 14164
Pathway
ppun02024  Quorum sensing
ppun03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppun00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PP4_49600 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PP4_49600 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppun03019]
    PP4_49600 (hfq)
   03036 Chromosome and associated proteins [BR:ppun03036]
    PP4_49600 (hfq)
Messenger RNA biogenesis [BR:ppun03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PP4_49600 (hfq)
Chromosome and associated proteins [BR:ppun03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PP4_49600 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: BAN56813
Position
complement(5610529..5610789)
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVPVSIYLVNGIKLQGSIESFDQFVVLLKNTVSQMVYKHAIS
TVVPARPVRLPSPSDSDLGDSEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaacaccttgagaaaagaaaaggtt
ccggtatcgatctatctggtcaacggcatcaaactgcagggctcgatcgaatcgttcgac
cagttcgtggtactgctgaagaacaccgtcagccaaatggtttacaagcacgccatttcg
accgtggtgcctgcccgtccggttcgcctgccaagcccgtccgattccgacctcggcgac
agcgagccaggcaacgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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