KEGG   Pseudomonas putida NBRC 14164: PP4_52890
Entry
PP4_52890         CDS       T02707                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ppun  Pseudomonas putida NBRC 14164
Pathway
ppun03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppun00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PP4_52890 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppun03021]
    PP4_52890 (rho)
   03019 Messenger RNA biogenesis [BR:ppun03019]
    PP4_52890 (rho)
Transcription machinery [BR:ppun03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     PP4_52890 (rho)
Messenger RNA biogenesis [BR:ppun03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     PP4_52890 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 NACHT
Other DBs
NCBI-ProteinID: BAN57142
Position
complement(5983305..5984564)
AA seq 419 aa
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaacctgactgaactcaagcaaaagccgattaccgatcttttggaaatggccgaacag
atgggcatcgagaacatggcccgttcgcgcaaacaggacgtgatcttcgccctgctgaag
aagcacgcgaagagcggcgaagagatttcgggtgacggcgtgctggagattctccaggat
ggtttcggtttcctgcgctcggctgatgcgtcctacctggccggcccggacgatatctac
gtctcgcccagccagatccgccgtttcaacctgcgtaccggcgacaccatcgtcggcaag
atccgcccgccgaaggaaggggagcgttacttcgccctgctgaaggttgataccatcaac
ttcgaccgtccggaaaacgcgaagaacaagatcctgttcgaaaacctgacgccgctgttc
ccgaacaagcgcctgaagatggaagccggtaacggctccaccgaagacctgaccggtcgc
gtcatcgacctgtgcgccccgatcggcaaaggccagcgtggcctgatcgtcgccccgcca
aaagcaggcaagaccatcatgcttcagaacatcgcggccaacatcacccgtaacaatccc
gagtgccacttgatcgtgctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcttccaccttcgacgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctggactccatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctgaccggtggtgtcgacgcccacgccctggagaagccgaagcgcttc
ttcggcgccgcgcgtaacatcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gtcgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggcaccggcaac
atggagctgccgctggaccgccgcatcgccgagaagcgcgtgttcccggccatcaacatc
aaccgttccggtacccgccgcgaagagctgctgactgccgacgacgaactgcagcgcatg
tggattttgcgcaagctgctgcacccgatggacgaaatcgctgccatcgagttcctggtc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtcgatgaagcgcaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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