KEGG   Pseudomonas putida H8234: L483_29620
Entry
L483_29620        CDS       T02706                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pput  Pseudomonas putida H8234
Pathway
pput02024  Quorum sensing
pput03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pput00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    L483_29620
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    L483_29620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pput03019]
    L483_29620
   03036 Chromosome and associated proteins [BR:pput03036]
    L483_29620
Messenger RNA biogenesis [BR:pput03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     L483_29620
Chromosome and associated proteins [BR:pput03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    L483_29620
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AGN80780
Position
complement(6250298..6250558)
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVPVSIYLVNGIKLQGSIESFDQFVVLLKNTVSQMVYKHAIS
TVVPARPVRLPSPSDSDLGDSEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaacaccttgagaaaagaaaaggtt
ccggtatccatctacctggtcaacggtatcaaattgcagggctcgatcgaatcgttcgac
cagttcgtggtactgctgaagaacaccgtcagccaaatggtctacaaacacgccatttcg
actgtagtgcctgcccgtccggttcgcctgccaagcccgtccgattccgacctcggcgac
agcgagccaggcaacgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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