KEGG   Pseudomonas sp. UW4: PputUW4_03089
Entry
PputUW4_03089     CDS       T02357                                 
Symbol
tssC
Name
(GenBank) EvpB family type VI secretion protein
  KO
K11900  type VI secretion system protein ImpC
Organism
ppuu  Pseudomonas sp. UW4
Pathway
ppuu02025  Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:ppuu00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02025 Biofilm formation - Pseudomonas aeruginosa
    PputUW4_03089 (tssC)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:ppuu02044]
    PputUW4_03089 (tssC)
Secretion system [BR:ppuu02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   PputUW4_03089 (tssC)
SSDB
Motif
Pfam: VipB VipB_2
Other DBs
NCBI-ProteinID: AFY20284
Position
complement(3631174..3632712)
AA seq 512 aa
MSIEHSHAQSRGTTVLPEESQGVYGALFGKINLNPVKVLGEIEVFQSSEALSDVSADERV
TAAVSVFLNLIKQSSRKVRRLDRTLLDEHIASLDAQISRQLDAVMHHPDFQRVESTWRGV
KSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEIAQSGLYVHTYTQEYDTPGGEPIAAA
ISNFEFDRSPQDIALLRNISKVSAAAHMPFIGSVGPAFFGKHSMEEVAAIKDIGNYFDRA
EYIKWKAFRDSDDARYIGLLMPRVLGRLPYGPDTVPVRSFNYIESVKGPDHDKYLWTNAS
FAFAANMVKSFIANGWCVQIRGPQSGGAVTDLPIHLYDLGTGNQVKIPSEVMIAETREFE
FANLGFIPLSYYKNRDYACFFSANSTQKPALYDTPEATANSRINARLPYIFLLSRIAHYL
KLIQRENIGTTKDRRLLELELNKWVSGLVTEMNDPGDSLQASHPLRAGRVTVEDIEDNPG
FFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA
NT seq 1539 nt   +upstreamnt  +downstreamnt
atgtctatcgaacattctcacgcgcaatcgcgcggcactacagtgttgcctgaagaaagc
caaggcgtgtatggcgcgttgtttggcaagatcaatctcaacccggtaaaagtgctgggc
gaaattgaagtgtttcaaagttccgaggcgctgtcggacgtttctgccgatgagcgagtg
actgccgctgtcagtgttttcttgaatttgatcaaacagtcttcgcgcaaagtccggcgt
ctggacaggacactgctggatgaacatattgcgtcgctggatgcacaaatcagccgccaa
ctggacgccgtgatgcatcacccggatttccagcgggtggagtccacctggcgcggtgtg
aaatcgctgatcgatcagaccgacttccgccagaacgtgcgcatcgaattgcttgatatc
agcaaggatcacctggtccaggatttcgaggatgcaccggagatcgcacaaagtggcctg
tatgtgcatacctacacccaggagtacgacaccccgggtggtgagccgatcgccgctgcc
atttccaacttcgagttcgaccgcagcccgcaggacattgccttgctgcgcaatatttcc
aaagtctcggcagccgcgcacatgcccttcattggctccgtcggcccggccttttttggc
aagcactcgatggaagaagtcgccgccatcaaggacatcggcaactactttgatcgtgcc
gaatacatcaagtggaaagcgttccgcgacagcgacgatgcccgctatatcggcttgctc
atgccccgcgtgctgggccgtctgccgtatggcccggacaccgttccggtgcgcagcttc
aactacatcgaaagcgtcaagggaccggaccacgacaaatacctgtggaccaacgcctcg
tttgccttcgctgccaacatggtcaagagctttatcgccaacggctggtgcgtgcagatc
cgcggtccgcagtctggcggcgcggtcaccgacttgccgatccacttgtatgatctgggc
actggcaatcaggtgaagatcccttcggaagtgatgattgcggagacgcgcgagttcgag
ttcgccaacctcggtttcatcccgctctcgtactacaagaaccgtgactatgcgtgcttc
ttctcggccaactccacgcagaaaccggcgctatacgatacccctgaggccaccgccaat
agccggatcaatgcgcgcctgccctacatcttcctgctgtcacgcattgcccattacctg
aagctgatccagcgcgaaaacatcggcaccaccaaggatcgccgattgctggagctggag
ctgaacaagtgggtcagcgggctggtcaccgagatgaacgatccgggcgactcgctgcag
gcttcgcacccgttgcgggctggccgggtcaccgtcgaagacatcgaggacaacccgggt
ttcttccgcgtcaagttgtacgccgtgccgcatttccaggtggaaggcatggacgtcaac
ctgtcgctggtttcgcagatgcccaaggcaaaagcctga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (4)   

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