KEGG T02456: H045

Pseudomonas poae: H045_21050

Entry

H045_21050        CDS       T02456

Symbol

gyrB

Name

(GenBank) DNA gyrase subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

ppz Pseudomonas poae

Brite

KEGG Orthology (KO) [BR:ppz00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppz03032]
    H045_21050 (gyrB)
   03400 DNA repair and recombination proteins [BR:ppz03400]
    H045_21050 (gyrB)
Enzymes [BR:ppz01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     H045_21050 (gyrB)
DNA replication proteins [BR:ppz03032]
Prokaryotic type
  DNA Topoisomerases
   H045_21050 (gyrB)
DNA repair and recombination proteins [BR:ppz03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      H045_21050 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3

Other DBs

NCBI-ProteinID:

AGE28272

Position

4772709..4775126

AA seq 805 aa
MSEERTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD
ISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
GVSVVNALSEELILTVRRAGKIWEQTYVHGVPQEPMKIVGDSETTGTQIHFKPSDETFKN
IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQV
FHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEA
EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSD
FLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE
LYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG
RDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKK
GKQEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDFRMVMKTLKRLSR
LYPQELTEHFIYLPSISLEQLGDHAHMQAWLAQYEVRLRTVEKSGLVYKASLREDRERNV
WLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDDGAYIQRGERKKAVKEF
KEALDWLMTESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNT
LMGDAVEPRRDFIESNALAVSNLDF

NT seq 2418 nt +upstreamnt +downstreamnt
atgagcgaagaaagaacgtacgactcgaccagcattaaagtgctgaaaggtttggatgcc
gtacgcaaacgtcccggtatgtacattggcgacaccgatgatggcagcggtttgcaccac
atggtgttcgaggtggtcgacaactccatcgacgaagctctggccggtcactgcgacgac
atcagcatcatcatccacccggacgaatccatcaccgtgcgtgacaacggtcgcggcatt
ccggtcgatgttcacaaagaagaaggcgtatcggcagctgaagtcattatgactgtgctg
cacgccggcggtaagttcgacgacaactcctacaaggtttcaggcggtttgcacggtgtg
ggtgtatcggtcgttaacgccctgtccgaagaactgatcctgactgttcgccgtgccggc
aagatctgggagcagacctacgtccatggtgttcctcaagaaccgatgaaaatcgttggc
gacagtgaaaccacgggcacgcagatccacttcaagccgtctgatgaaaccttcaaaaat
atccatttcagctgggacatcctggccaagcggattcgtgaactgtctttcctgaactcc
ggtgtaggtatcgtcctcaaggacgagcgcagcggcaaggaagagctgttcaagtacgaa
ggcggcttgcgtgcattcgttgaatacctgaacaccaacaagactgcggtcaaccaggtg
tttcacttcaacattcagcgtgaagacggcatcggcgttgaaatcgccctgcagtggaac
gacagcttcaacgagaacctgttgtgctttaccaacaacattccacagcgcgatggcggt
actcacctcgtgggtttccgttccgcactcacgcgtaacctcaacaactatatcgaagct
gaaggtttggccaagaagcacaaagttgccaccaccggtgacgacgcgcgtgaaggcctg
accgcaattatctcggtaaaagtgccggaccccaagttcagctcccaaaccaaagacaag
ctggtgtcttccgaagtgaagaccgccgtggaacaggagatgggcaaatacttctccgac
ttcctgctggaaaatccgaacgaagccaagctggttgtcggcaagatgatcgacgctgcg
cgtgctcgtgaagcggcgcgtaaagcccgcgagatgacccgtcgcaaaggcgcgctggat
atcgccggtctgcccggcaaactggcggactgccaggagaaggaccctgccctctccgaa
ctgtatctggtggaaggtgactctgctggcggttccgccaagcagggtcgtaaccgtcgt
acccaggccatccttccgttgaagggcaagatcctcaacgttgagaaggcgcgcttcgac
aagatgatttcctcgcaggaagtcggcaccctgatcacggcgttgggttgtggtatcggc
cgcgacgaatacaacatcgacaagctgcgctatcacaacatcatcatcatgaccgatgct
gacgttgacggttcgcacatccgtaccctgctgctgaccttcttcttccgtcagttgcct
gagctgatcgagcgcggctacatctacatcgctcaaccgccgctgtacaaggtcaagaag
ggcaagcaagagcaatacatcaaagacgacgacgccatggaagagtacatgacgcagtcg
gccctggaagatgcgagcctgcacctgaacgacgaagcaccgggcatctcgggcgagtcg
ttggagcgcctggttaacgacttccgcatggtgatgaagacgctcaagcgcttgtcgcgc
ctgtaccctcaggagcttaccgagcacttcatctacctgccatcgatcagccttgaacag
ctgggtgaccacgcgcacatgcaggcgtggttggcacagtacgaagttcgtctgcgcacc
gtcgaaaagtctggcctcgtgtacaaagccagtttgcgtgaagaccgtgaacgtaacgtc
tggctgccggaggtggaactgatctcccacggcctgtcgaactacgtcaccttcaaccgc
gacttcttcggcagtaatgactacaaaaccgtagtcaccctgggcgcgcaactgagcacc
ctgctggacgatggtgcgtacattcaacgcggcgaacgcaagaaagcggtcaaggagttc
aaggaagccctggactggttgatgactgaaagcaccaagcgtcacaccatccagcgctat
aaaggtctgggcgagatgaaccctgaccaattgtgggaaaccaccatggacccggctcag
cgtcgcatgttgcgcgtgaccatcgaagacgccattggcgcggatcagatcttcaacacc
ctgatgggtgatgcggtcgagcctcgtcgtgacttcatcgagagcaatgcactggcggtt
tctaacctggacttctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

Download RDF

DBGET integrated database retrieval system