KEGG   Limnobaculum zhutongyuii: EKN56_08350
Entry
EKN56_08350       CDS       T06157                                 
Name
(GenBank) exoribonuclease II
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
prag  Limnobaculum zhutongyuii
Brite
KEGG Orthology (KO) [BR:prag00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:prag03016]
    EKN56_08350
Enzymes [BR:prag01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     EKN56_08350
Transfer RNA biogenesis [BR:prag03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    EKN56_08350
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 Rho_RNA_bind PilZ ODP
Other DBs
NCBI-ProteinID: QBH96407
UniProt: A0A411WJR1
Position
1905966..1907909
AA seq 647 aa
MFQNNPLLAQLKQQLHANTPRVEGIVKATEKGFGFLEVDNQKSYFIPPPQMKKVMHGDRV
SATIHTEKDRELAEPETLIEPFLTRFIGRIQQKNDRLMVVPDHPMIKDVIPCKPVKGLTH
ALTQGDWVVAEITNHPLKDNRGFQAQINEYITHGDDHLAPWWVTLSRHQLERTAPEWTSE
SIQDDGIVRRDLTELNFVTIDSESTEDMDDALYVEQLDNQLLRLSIAIADPSAYVAAGSE
LDNIALKRAFTNYLPGFNIPMLPRELSDNLCSLQPNQRRPALVCQVTISPDGSISDDIEF
FCAWVTSKAKLDYEKLSDWLEGIDGWKPEQPEIAQQVELLHQVALRRISWRTEHALVFKD
RPDYRFILGENGQVLDIVTEYRRIANRIVEESMIVANICAAIVLKTRLGYGIFNVHAGFD
PTVVDQAINILELNGAEFNKEKILTLDGFCELRRFLDKQPTSYLDSRIRKYQTYAEISTA
PAPHYGLGLEAYATWTSPIRKYGDIINHRLLKALIHDRPSTAPDESVMQPLTERRRANRI
AERDVSDWLYARFLQDKAGTDIRYQAEIMDISRGGMRIKLIENGAVAFIPAPFIHPVRDE
LVCSAENGTIQLNGNVIYRQGDSLEVTIAEVRMETRSIIARPAPSLS
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgtttcaaaataacccgctgctcgctcagcttaaacagcaacttcatgctaatactcca
cgggttgaaggcattgttaaagccaccgaaaaagggtttggctttcttgaagtagataat
caaaaaagctacttcattccacctccacaaatgaagaaagtcatgcatggagaccgcgtt
tcagccactatccatacggaaaaggatcgtgagttggcggaaccggaaacgctcatagag
ccatttctgacgcgctttattggtcgtattcaacagaaaaatgaccggttaatggtggtt
cccgatcacccaatgattaaagatgtcattccgtgcaagccggtaaaaggattgactcat
gctttaactcagggggattgggtcgtcgcagagataaccaatcatccattgaaagataat
cgtgggtttcaggcgcaaatcaatgagtacattacccatggggatgaccatttagcacca
tggtgggtgacattgtcacgtcatcaattagaacgtacagcaccagaatggacgtcagaa
tctattcaggatgacgggattgttcgccgtgatttaaccgaattaaactttgttactatt
gatagcgaatctaccgaagatatggatgatgcgctgtatgttgaacaactggataatcag
ttacttcgactttccattgctattgccgatcccagtgcttatgtcgctgccgggagtgaa
ctggataacattgctttaaaacgcgcgtttaccaattatttgccgggttttaatattcca
atgctcccaagagagctgtcggataacctttgttctttacagccaaatcaacgtcgtcca
gcactggtttgtcaggtgactatctctcctgatggctcaatcagtgatgatattgagttt
ttctgcgcatgggtaacgtctaaggctaaacttgactatgaaaagctttcagactggctg
gaaggtatcgacggctggaaaccagaacaacctgaaatagctcaacaagtagaattgctg
catcaggtggcattacgtcgcatatcctggcgcacagaacatgcactggtatttaaagat
cgtcctgactatcgcttcattcttggtgaaaatggtcaggtattggatatcgttaccgaa
tatcgtcgtatcgctaatcgtattgttgaagaatcaatgattgtggccaacatctgtgct
gctatcgtattaaagacgcgattaggttatggcatctttaacgttcatgcgggttttgac
cctaccgtggtcgatcaggcgatcaatattctggaactgaatggagcagaatttaataaa
gagaagatcctgacgcttgatggattctgcgaacttcgacgtttcctggataaacagcca
acatcctatctggatagccgtattcgcaaataccaaacttatgcagaaatcagtacagcg
ccagcgcctcactatggattgggtttggaagcttacgctacctggacctctccaatccgt
aaatatggcgatattatcaatcatcgcttattaaaagccttaattcacgatcgcccctct
acagcgccagatgaaagtgtcatgcagccgctgacagaacgccgtcgggctaatcgcatt
gctgaacgtgatgtcagtgactggttatatgctcgctttttacaggataaggctggaaca
gatattcgctatcaggcagaaattatggatatctcccgtgggggtatgagaattaaactg
atagaaaatggcgccgtagcctttattccggcgccatttattcacccagtgcgtgatgaa
ctggtttgtagcgccgaaaacggtactatacagctcaatggcaatgtgatttatcgtcag
ggtgattcactggaagtgactattgctgaggttcgaatggaaacgcgcagtattatcgct
cgcccggcaccctcactctcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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