KEGG   Limnobaculum zhutongyuii: EKN56_17925
Entry
EKN56_17925       CDS       T06157                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
prag  Limnobaculum zhutongyuii
Pathway
prag03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:prag00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EKN56_17925 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:prag03021]
    EKN56_17925 (rpoB)
   03400 DNA repair and recombination proteins [BR:prag03400]
    EKN56_17925 (rpoB)
Enzymes [BR:prag01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EKN56_17925 (rpoB)
Transcription machinery [BR:prag03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     EKN56_17925 (rpoB)
DNA repair and recombination proteins [BR:prag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      EKN56_17925 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: QBH98101
UniProt: A0A411WPF0
Position
complement(4018201..4022229)
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYDRDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDFSTEQILDLFFDKIVFEIRDNKLQME
LVPERLRGETASFDIEAGGKIFVEKGRRITARHIRQLEKDGIDKIEVPTEYIIGKVVSKD
YIDEKTGEIICPANMELTLDLLAKLSMAGHKRIETLFTNDLDHGAYISETVRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLSREEIEGSGIL
SKDDIIEVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGLVT
DEIHYLSAIEEGNYVIAQANSNLDDEGRFMEDLVTCRNKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVATR
GGTVQYVDASRIVIKVNEDEMMPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEDMQLKQVKKDL
TEELKIFEAGLFARIHDVLVSGGIEEEKLSKLTHDKWLEIGLSDEDKQNQLEQLAEQYDE
LKSEFEKKLEGKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGVPVDLVLNPLGVPSRMNIGQILETHLGLAAKGIGDKINAMLKQQQEVAK
LREFIQKAYDLGDDTRQTVDLAKFTDEEVLTLAENLRKGMPIATPVFDGAKEKEIKELLT
LGGLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggcaaacgtccacaa
gttctggacattccttaccttctttctatccagcttgactcgttccagaagttcatcgag
caagacccggaaggccaacatggactggaagcagcattccgttcagtgttccctatccag
agctacagcggtaactcagagttacagtatgtaagctatcgtcttggtgagcctgtattc
gatgtcaaagagtgtcaaatccgtggtgtgacctattccgcaccgctgcgcgtaaaactg
cgcctggtgatttacgatcgtgacgctccggcgggcacggttaaagacatcaaagaacaa
gaagtttacatgggtgaaattccactcatgaccgataacggtacctttgttattaacggt
acagagcgtgttatcgtttctcagttacaccgtagtccgggtgtgttctttgatagcgac
aagggtaaaacccactcatcgggtaaagtgctgtataacgcacgtattattccttaccgc
ggttcctggttagatttcgagtttgacccgaaagataacctgtttgttcgtattgaccgc
cgtcgtaagctgccagcgaccattattctgcgtgcgctggatttctcgactgaacaaatt
ttagatctgttctttgacaagatcgtatttgaaatccgtgataacaagttgcagatggaa
ctggttcctgagcgcctgcgcggtgaaactgcctctttcgacatcgaagctggcggtaag
atctttgtagagaaaggtcgtcgtattactgctcgtcatattcgccagcttgaaaaagat
ggcatcgataaaattgaagttccgaccgaatacattattggaaaagtcgtatctaaagat
tatatcgatgagaagaccggggaaatcatttgccctgcgaatatggagctgacgttagat
ctgctggctaagctgagcatggctggccacaagcgtattgaaacgctgtttaccaacgat
ctggaccacggtgcttatatctccgagaccgtacgtgtcgatccaacctccgatcgctta
agcgcgctggttgaaatttaccgtatgatgcgtcctggtgagccaccaacgcgtgaagct
gcagaaaacctgtttgagaacttgttcttctctgaagatcgttatgacctttctgcggta
ggccgcatgaagttcaaccgttctttaagtcgtgaggaaattgaaggttcaggcattctg
agcaaagacgacattattgaagtgatgaagaaactgatcggtatccgtaatggtatcggt
gaagtggatgatatcgatcacttgggtaaccgtcgtattcgttccgttggtgagatggcc
gaaaaccaattccgtgttggtttagtgcgcgttgagcgtgcggttaaagagcgtctgtca
ttaggcgaccttgataccctgatgcctcaggacatgatcaacgctaagccaatttcggca
gcggtgaaagagttctttggttcaagccagctttcacaatttatggatcagaacaaccca
ctgtctgagattacgcacaaacgtcgtatctctgcactgggcccgggcggcttaacgcgt
gagcgtgctggctttgaagtccgtgacgtacacccgactcactacggtcgcgtatgtcca
atcgaaaccccggaaggtccaaacatcggtctgatcaactccctgtctgtgtatgcgcag
actaacgagtatggtttcctggaaaccccatatcgtcgcgtacgtgacggtctggtaacc
gatgagattcattacttatccgccattgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccgcttcatggaagatctggtgacctgtcgtaacaaaggt
gaatcaagcctgttcagccgcgatcaagtggactatatggacgtttcaacccaacaggtt
gtctccgtaggtgcttcactgatcccgttcctggagcatgatgacgccaaccgtgccctg
atgggtgcgaacatgcaacgtcaggcggttccaaccctgcgcgctgataagccgctggta
ggtaccggtatggaacgtgctgtagcagttgactccggtgtaaccgccgttgcaactcgt
ggcggtaccgttcaatacgttgacgcatctcgtatcgtaattaaagttaacgaagacgag
atgatgccgggcgaagcaggtatcgatatttataacttgactaaatacacccgttctaac
cagaacacctgtatcagtcaaatgccatgcgtctctttaggcgagccagttgaacgcggt
gacgtgttagctgatggtccgtctactgacctgggtgaactggctcttggccagaacatg
cgcgtcgcattcatgccttggaatggttataacttcgaagactccatcctggtatctgag
cgtgttgtacaggaagaccgtttcacaacgatccacattcaggaactttcttgcgtatcc
cgcgatactaagttagggccggaagagatcactgctgatatccctaacgtgggtgaagca
gcgctgtctaagctggatgaatccggtatcgtttatatcggtgctgaagtgaccggtggt
gacattctggttggtaaagtaacgcctaaaggcgaaactcaactgacgccagaagagaaa
ctgctgcgcgcgatttttggtgagaaagcgtctgatgttaaagactcttcactgcgcgtg
ccaaacggtgtttcaggtaccattattgacgttcaggtatttacccgtgacggcgtagaa
aaagataagcgtgcgcttgaaatcgaagatatgcagctgaagcaggttaagaaagacctg
accgaagagctgaagattttcgaagctggtctgtttgctcgtattcacgatgtgctggtt
tctggcggcatcgaagaagagaaattgagcaagctgactcacgacaagtggcttgaaatc
ggtttaagtgacgaagataagcaaaaccaactggaacagttggcggagcaatacgacgaa
ctgaaatctgagtttgagaagaaacttgaaggtaagcgccgtaagatcactcagggcgac
gatttagcccctggcgttctgaagattgtcaaagtctatctggcggttaagcgtcagatt
cagcctggtgacaagatggcaggtcgtcatggtaacaaaggtgttatctctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcgtgcctgttgacttagttctgaacccg
ctgggtgtaccatcgcgtatgaacatcggtcagattctggagacccacctgggtctggct
gctaaaggtattggcgacaagattaacgccatgctgaaacagcagcaggaagttgcaaaa
ctacgtgaatttatccagaaagcttacgatctgggtgatgatacgcgtcagacagtagac
ttagctaagtttaccgatgaagaagtgctgactctggcagagaacctgcgtaagggtatg
ccgattgcaacaccagtgtttgatggtgcaaaagagaaagaaatcaaagagctgctgact
ctgggcggtttaccgacctctggtcagatcacgctgtttgatggacgtaccggtgaacag
ttcgaacgtccggttaccgttggctatatgtacatgctgaaactgaaccacttggttgat
gacaagatgcatgcacgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggctcagttcggtggacaacgcttcggtgagatggaagtgtgggcgctggaagct
tatggtgcagcgtacacgctacaggaaatgctgaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtacaaaaacatcgtggatggcaaccatcagatggagccaggcatgccg
gaatccttcaacgtattgttgaaagagatccgctcgctgggtatcaacatcgagttggaa
gaggaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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