KEGG   Pieris rapae (cabbage white): 110999867
Entry
110999867         CDS       T05162                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
prap  Pieris rapae (cabbage white)
Pathway
prap03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:prap00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110999867
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:prap03019]
    110999867
Enzymes [BR:prap01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     110999867
Messenger RNA biogenesis [BR:prap03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110999867
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     110999867
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1 LRR_9
Other DBs
NCBI-GeneID: 110999867
NCBI-ProteinID: XP_045487869
Position
17:5432160..5596167
AA seq 545 aa
MSRNKDKHEGASARTYHIMSEAERASGRRGCWTTLEITGGVRALAPQLFQLSHLTALYLN
DNSLQRIPPDINQLVNLHTLDLSSNKLRTLPAELGDLIQLRELHLHNNYLRVLPYDLGKL
FHLQLLGLQGNPLSKEMLSIYNDNNGTAKLLTYLLDNLQVTATLPPQRPWIPLTRPNRSR
PTCIFTVMCYNVLCDKYATRQMYGYCPSWALEWDYRKKGILDEIRHYSADIISLQEVETD
QFYNFFLPELKQDGYDGIFSPKSRAKTMAESERKYVDGCAIFFRSAKFSLVKEHLIEFNQ
LAMANSEGSDNMLNRVMPKDNIGLAALLKTKEAAWENGENCLPTETSALSQPILVCTAHI
HWDPEFCDVKLIQTMMLSNELRSILDDSARTLRLTGQKDNVQLLLCGDFNSLPDSGVVEF
LSAGRVSADHRDFKALAYANYLRRMPGSDHEFTHNFKLASAYSEDIMPYTNYTYDFKGII
DYIFYSKQSMTPLGLLGPLSQDWFREHKVVGCPHPHIPSDHFPLLVELEMCPTASTNSNG
LIGRR
NT seq 1638 nt   +upstreamnt  +downstreamnt
atgtctcgcaataaagacaagcatgagggcgctagcgcgcgtacctaccacattatgtct
gaggcggagcgggcatcaggcagacgcgggtgctggacaacgcttgagataacaggaggt
gtgcgcgctctagcgccccaactttttcaactgtcgcacctcacagcgttgtaccttaac
gacaactcgttacaacggattccgcctgatatcaaccaactggtcaacctgcacactctc
gatttgtccagcaacaaactgaggacactgcccgctgagttaggagacctcatacaactc
agagaattacacctgcacaataactacctgagagtactgccatacgatctgggaaaactc
tttcaccttcaactcctaggtcttcagggaaacccgctgagtaaggagatgctatcaata
tacaacgacaataatgggactgccaagctgctaacgtacctactggataacttgcaagtt
accgccactctaccacctcagagaccttggatacccttaacgagaccgaataggagtcgt
cctacttgtatattcacggtgatgtgctacaacgtgctgtgtgacaaatatgcgacgaga
cagatgtacggatactgccccagttgggcgctagagtgggactatcggaaaaaaggcata
ttggacgagatacgacattattctgcggacatcatcagcttacaggaggtggaaacggat
cagttctacaatttctttttaccggagttgaaacaggacggctacgatggcatcttctca
ccgaagtctcgcgccaaaactatggcggagtctgagaggaaatacgtcgatggatgcgct
atattcttcagatctgctaagttttcattggtaaaggaacacttaatcgaattcaatcag
ctggctatggcgaatagcgaaggctcagataacatgttgaatcgagttatgccgaaagac
aatatcggtctagctgccttgttaaagaccaaagaggcggcgtgggagaatggtgagaat
tgtctaccaacggagacatcggcgctttcgcaaccaatccttgtatgcacggcccacatt
cattgggaccctgagttttgcgatgtgaagttgatacaaacaatgatgctgagcaatgaa
ctgagatcgattttggatgactctgcgcgtacgctgcgattgaccggacagaaggacaac
gttcaactgttgttgtgtggagattttaattcgctgcctgatagtggtgtagtcgagttc
ctctcggcagggcgtgtctctgccgaccaccgcgacttcaaagcgttggcctacgcgaat
tatctccgccgaatgccgggttcagatcacgagttcacgcacaacttcaaactcgcttcc
gcctacagcgaggacatcatgccctacactaattacacgtacgacttcaaaggcatcatc
gactatatcttctacagcaagcagtcgatgacccctctgggtcttctggggcctctgtcg
caggactggttccgcgaacacaaggtcgtcggctgtccgcatccgcacataccttcagat
catttccctctactagtagaactcgagatgtgtccaacggcgagcaccaactcgaacgga
ctaattggacgcaggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (54)   

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