KEGG   Poecilia reticulata (guppy): 103458599
Entry
103458599         CDS       T05149                                 
Symbol
col12a1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
  KO
K08132  collagen type XII alpha
Organism
pret  Poecilia reticulata (guppy)
Brite
KEGG Orthology (KO) [BR:pret00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:pret00535]
    103458599 (col12a1)
Proteoglycans [BR:pret00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   103458599 (col12a1)
SSDB
Motif
Pfam: fn3 VWA VWA_2 Collagen Pur_ac_phosph_N Interfer-bind Laminin_G_2
Other DBs
NCBI-GeneID: 103458599
NCBI-ProteinID: XP_008397751
Position
LG22:complement(12861894..12925515)
AA seq 3118 aa
MKIRLSLAAAAFLAALLSSIDAQVEPPSDLKFKILNENTVEMSWVRPSATIEGFRIQVVS
DADEPARYLNLGAEISTTLLNNLTPDLDYTVSINSFYGSEESIPIYGQLTIQSSNTSGKA
RKPHSDAIKCSVSAIADLVFLVDGSWSVGRENFRHIRSFIGALAGAFDIGEDKTRVAVVQ
YSTDTRTEFPLTRYTRRGDLLQAINSLPYKGGNTMTGDAIDYLMKNIFTEAAGSRKGFPK
VAMIITDGKSQDPVEEHAEKLRNIGVEIFVLGIKGADEDELKEIASTPHGKHVYNVPNFD
LIQDVQKKIITEVCSGVDEQLTSLVSGEEMVEPASNLQVTEIASKSMRVTWDPSPGEITG
YKLTLIPMVPGMKRQELYIGPTQISINARDLSPETEFEISLFALKGLTPSEPILDLAKTQ
PVKVSTECSLGVDVQADVVLLVDGSYSIGLQNFAKVRAFLEVLVTSFDIGPNKIQISLVQ
YSRDPHTEFALNTHHDINAAVKAVRSFPYRGGSTNTGKAMTYVRERIFVPGRGARDNVPR
VMVLITDGKSSDSFKDAAAKLRNVDVEIFAVGVKDAVRSELEAIANPPADTHVYEVEDFD
AFQRISKELTQSICLRIEQELLKIKKKSLLPPQDLRFSEITSRSFRATWTAPAAAVLSYL
VRFRKAEDITGDYVSLIVPGDTTTSILPHLFPVTTYEVNVFSQYDKGDSFPLTGEETTLE
EQGQVRNLRVTEETTNSFRVSWQAAPGAVIRYRLSYVPLSGTGEIIEAQTIGAETTIVLQ
ELFPITTYRVSVSPEYASGMGDEMLIDGTTKEVRGSPRDLRVFEETISTMKLTWQAAPGN
VLQYRIAYKPAEGGERKETSVNGDTTQAMLKNLQPATEYELFVTARYSTGLGDPLLGTGT
TLEELGSPRDLVTKDVTDTSFAVSWKAAPGNVRQYRVTWKSLFSDETGEKTTPGDTTATV
LDGLTPETRYQVSVFAVYGHGEGQPLVGEETTDISASGKTIVVSDETEKTMKVTWQPAPG
NVVNYRVTYKPQPGGRQLAAKVPGGTTSTVLRRLTPFTTYDLTVVPVYRSGEGKTREGEG
TTLSPYKGPRNLQTSEPTKTSFRVTWDHAPGDVKGYKVKFHPAEDNIDLRELMVGPYDNT
VVLEELRAGTKYTVSVLGMFDGGESVPLAGEENTTYSDAPEPPAYDGPNKMCKTTAKADI
VLLVDGSWSIGRLNFKTIRAFIARMVGVFDIGPDKIQIGLAQYSGDPKTEWHLNAHPTRD
SLLNAVNNLPYKGGNTMTGMALNFILQNNFKESVGMRPSARKIGVLVTDGKSQDEVVIPS
QSLREQGIELYAIGVKNADENELRSIASDPDDIHMYNVADFSFLLDIVDNLSDNLCNSVK
GGGAPDAPTDLVTSEVTHQSFRATWTAPDGPVEKYRVEYMTVSGSPQQVFVDGSKTTVVL
QGLTPLTQYLVNVYSVVGEDSSDPLKGVETTLPLSAVRRMDIYDEQTTTMRVRWEKVQGA
TGYMLLYSAINATQPSIEQELRVGAGTADVQLVRLLPNTAYTLSLFALYGETASEPLTQQ
GVTKPMPPAGELRVRDVTHSTMVLYWDAAPGAVRKYIITYKAEEGEAKELEVGGRVIEKQ
LENLLSQTEYTLAVTPIYDEGAGQPMTGSAITDVVPAPKNLEFSEVTQTSFRATWEHGAP
DVALYRISWSKKGEGQFLDAILNNDETTHVMENLEPDTPYDVRVTAIYPDESESEDLMGT
ERTLPKDGTRPLPRAPPTNLVVYNETTTTLNARWTPPTGRVQNYKITYVPTAGGRSQTTQ
VGGKKTNVLLPKLTPDTEYSISVAAIYATGVSRDLNGIGKTKPLGGVRNLRVTDPTTSTL
NVLWEPAEGSVRQYRIYYVPAAGGSEEMVQVPGSTYNTVLKNLDSDTVYTVSVVPIYATG
DGLRLSENGKTLERSPVRNIKVFNPTTNTLNVRWEAATGPVQQYRVVYAPLIGTRPSESI
LVPGTTTTALLTQLLPDTDYNVAVVALYSDGEGPAVSDDGKTLPRGGPRNMRVYDPTTTT
LSVSWEHAEGPVMQYRIAYAPTTGDPIEEYTSVQGNRNNVILQNLDPDTPYNIKVTAIYA
DGPGGELEGNGRTVGMLGPRNLRVSDEWYTRFRVSWDPAPSRVNGYKIIYQPEGTNDVLE
AFVGDVTSHQLQNLKTGTTYDLKVLAQYNTGFSGPLIGQGTTLYLNVTGLSTYNVGFESF
CLRWAPHRAATSYRLKVNPFDTSKRGAQEVTVRGSESNYCFDGLSPDTLYNATVYTQTPN
LEGPGVSVKERTLVKPTEVPTEPPTPPPPASVPPALDVCKGAKADLVYLIDGSWSIGDES
FNKVIQFTTKMTAAFDVISPRGMQVSFVQYSDDAKTEFKLNTYHDKGIVLSALQSVRYRG
GNTKTGVSLKHVYEKVLTSDSGMRRNVPKVLVVVTDGRSQDEVKKSAEKLQHSGYSVFVV
GVADVDIRELTVIGSKPTERHVFVVDDYDAFDKIQDNLITFICETATSTCPLIYINGYTT
PGFRMLEAFNITDRTFAGMNGVSMETGSFNSYIAYRLHKDSYLTQPTKEIHPDGLPPSYT
IVLLLRLLPDTPSEPFDVWQIADKNNNPEVGVTMNPSTQTLTFYNKDTRGEIQRAVFNEA
QVKRIFHGSFHKIHITISPEKVKLTVDCQEVAEKPIKEANNITLEGYEVLGKMVKSSGSK
KTSATFQLQMFDIVCSLSWISRDKCCDLPATRDEAKCPSLPHSCTCTQDSIGPQGPPGPS
GSPGTKGPRGDRGTPGNPGPMGPRGESGVPGTMGPPGPQGPTGLSRPGEPGRPGPKGDRG
DPGITGLQGPPGPRGPLGPVGPSGARGPPGKEGTSGPRGPPGPMGSPGNPGIPGITGKPG
KPGDPGSPGLVGLKGEKGEKGDFASQNMMRSIARQVCEQLVNSQMSRIDVLLNQIPSGYR
SNTPGPPGLPGPPGETGSRGEPGQPGRSGFPGTPGLPGNQGERGLPGEKGERGAPGNDIR
GQRGPSGPPGPPGESRTGPPGPSGSSGPRGPQGRQGVPGVRGPPGPPGYCDSSQCVGIPY
NGQGYTATRYQPASEVETIPVEPVGEFGEFETIQSRGDSRGQRRQRSLQSDNTGRLAS
NT seq 9357 nt   +upstreamnt  +downstreamnt
atgaagataaggctgtcgctggctgcggctgccttccttgcagctctgctgtcctccata
gatgctcaagtggaaccgccctcagatttgaaatttaaaatactaaatgagaacacagtg
gaaatgtcatgggtaagaccctcagcaacgatagagggcttcagaatacaggtcgtatca
gatgcagatgaaccagcaagatatttgaaccttggtgcagaaatatctacaacattgctc
aacaatctgacaccggatttagactacacggtgtcaataaattccttttacggttcagag
gagagcatccccatctatggacaactgacaattcagtcaagtaacacaagtggaaaagcg
aggaagccacattcagatgcaatcaaatgttctgtgagcgccatcgcagatttagttttt
ctggtggatggctcgtggagtgtgggcagagaaaactttaggcatatccgtagtttcatt
ggtgctctggcgggggcctttgacatcggcgaggacaaaactcgtgtcgctgtggttcag
tacagcacagacactcgcacagagtttcccctcactcgttacaccagaagaggagacctt
ctgcaagccataaactcactgccttacaaaggagggaatactatgactggtgatgccata
gattacctgatgaaaaacatcttcactgaggcagctgggtcaagaaaagggtttcccaag
gtagccatgatcatcactgatggaaaatcccaggacccagtggaggagcatgctgaaaaa
cttaggaacatcggagtggaaatatttgtactaggtattaaaggagcagatgaagatgag
ctcaaagaaattgcctctacacctcacggcaagcatgtttacaatgtgcccaactttgac
ctgatccaagatgtccagaaaaagatcatcactgaagtttgctctggtgtagatgagcag
cttacctctctggttagtggggaagaaatggtggagcctgcctctaacctccaagtaaca
gaaattgcatccaagtcaatgagggtgacatgggatccctccccgggagaaatcacaggc
tacaagctgacccttattcccatggtgcctggaatgaagcgacaagaactgtacattgga
cccacacagatatctataaacgcacgagacctctctcctgagaccgagttcgagatcagc
ttgtttgccttgaaaggtctgactccaagtgaacccattctggatctagcaaagactcag
ccggtcaaggtgtccactgagtgctccctgggagtggatgtgcaggctgatgtggtgcta
ctggttgatggctcatacagtattggattacagaactttgctaaagtccgtgccttcctc
gaggtgctggtcacttcctttgacatcggacccaataagatccagattagcttggtccag
tacagtcgagatccacacacagagtttgccctaaacacccatcatgacattaatgctgct
gtcaaagctgtgcgtagcttcccgtaccgtggtggttccacaaatactggcaaagcaatg
acatatgtcagagagaggatcttcgtcccaggtcgtggagcgcgggataatgttcctcgt
gtcatggtcctcatcaccgatggaaagtcatcagactcttttaaggatgcggctgccaaa
ctgaggaatgttgatgtggagatctttgctgttggtgtgaaggatgcagtcagatctgag
ctggaggccattgccaatccgccagctgacactcatgtctatgaagttgaggactttgat
gctttccagagaatttccaaggagctgactcagtccatctgtctgaggattgaacaggaa
cttttgaagatcaaaaagaaaagcctccttcctcctcaagatctccgtttctctgagatt
acctccagaagcttccgtgctacttggacagctcctgctgctgccgttttgtcttacctt
gtgcgtttccgcaaggctgaagatatcactggagactatgtttccctgatagtgccaggt
gataccaccacatccattcttccccatctttttccagtcaccacctatgaagtcaacgtc
ttttctcagtatgacaaaggagacagttttcctttgaccggtgaagaaacaactcttgaa
gagcaaggccaagttcggaacctgcgagtgacagaggaaacaacaaacagtttcagggtt
tcatggcaggctgctcctggtgctgtgattaggtaccgtctgtcatatgttcctctaagt
ggcacaggagaaataatagaggcccagaccattggagcagaaactaccatagttctccaa
gagctcttcccaatcaccacctaccgcgtctctgtgtcccccgagtatgcaagtggcatg
ggagatgaaatgttgattgatggtaccaccaaggaagttcggggatctccacgagacctt
cgtgtctttgaagaaacaatatcaacaatgaaactgacatggcaggctgctccgggaaat
gttcttcagtaccgcattgcctataaacctgcagaaggaggtgagaggaaggagacatct
gtcaacggagatacgacccaggctatgttgaagaatctccaaccagccactgaatacgag
ctatttgtgactgcacgctattccaccggcttgggggatcctcttctgggtacaggaact
actttagaagagcttggctcacccagagacttggtgaccaaagacgtcaccgacaccagt
tttgcggtgtcctggaaggccgctccaggtaatgttcgtcagtatcgggtcacttggaag
tccctgttcagtgacgagactggagaaaagacaacaccaggagacaccaccgccactgtc
ctggatggtcttaccccagaaacacgttaccaggtgtcagtgtttgctgtttatggtcat
ggagaggggcagccactggttggagaagaaaccactgacatctcagccagcggcaaaaca
attgtcgtttcggatgagacagagaagaccatgaaggtgacatggcagccagcacctgga
aatgtggtcaactaccgtgttacctacaaaccacagccaggagggcgccagctagctgcc
aaagtacccggtggcaccacctctaccgttctgagacgccttacccctttcacaacctat
gacctgactgtggtgccagtctatcgttccggggaaggcaaaacaagggaaggagaagga
acaacattgtcaccttataaaggtcccaggaatcttcagacatctgaaccaacaaagact
agcttcagagtgacttgggaccatgctcctggtgatgttaagggctataaagtcaaattt
caccctgctgaggacaacatagacctgagggaacttatggttggtccctatgacaatact
gttgtgcttgaggaactcagagctggtactaaatacacagtgagtgtgcttggtatgttt
gatggaggagagagtgtgccgctggctggagaagagaacacaacgtactctgatgcacct
gagcctcctgcatatgatggaccaaacaaaatgtgtaaaaccactgcaaaggccgacatc
gtgctgctggtggacggttcctggagtatcggacggcttaacttcaagaccatccgggcc
ttcattgctcgcatggtgggagtctttgacatcggtcccgataaaattcagattggtctt
gctcagtacagtggtgacccaaagactgagtggcacttgaatgctcatccaacacgggac
tcactcctgaatgctgtgaataacctgccttacaagggaggaaacaccatgacaggaatg
gctcttaacttcatcctccagaacaattttaaagagagcgtggggatgcgacctagtgcc
cgaaagattggtgtcttggttactgatggaaaatcccaggatgaagttgtcatcccctca
cagagcctgcgcgagcagggcattgagctgtatgccattggtgtgaagaatgcagatgag
aatgagctgagatccattgcctctgatccggatgacatccacatgtacaacgtagctgat
ttctccttcctgttggacattgtggacaatctcagcgataacctctgtaacagcgtgaag
ggaggaggagccccagatgcacccactgatctcgtgacatcagaggtgactcaccagtcc
ttcagagccacctggaccgcccccgatggcccagtggaaaaatatcgagtggagtacatg
actgtgtcaggatccccacagcaggtgtttgttgatgggagtaagaccactgtggttctc
caaggcctcacacctctgacacagtacttggtcaatgtctactcagttgtgggagaagac
agcagcgacccactgaagggagttgaaaccacactgcctctgagtgctgtgaggaggatg
gacatttacgatgaacagacaaccaccatgcgagtcaggtgggaaaaggtgcagggtgcc
actgggtacatgctgctctacagcgccatcaatgccactcaacccagcattgagcaggag
ctgagagttggagcaggtacagctgatgtccagctggtgaggttactccccaacacagcc
tacacactctccctctttgccctctacggagaaacagcaagtgaaccactgacccagcag
ggtgtcaccaagcccatgccgcctgcaggtgaactgagagttcgtgatgtgacccacagc
accatggtgctgtactgggatgctgctcctggagctgttcgtaaatatatcatcacctac
aaagctgaagaaggagaggctaaagaacttgaagtgggaggaagggtgatagagaaacaa
ctggagaacctgctctcacagactgagtacactttagccgtcacgccaatttatgacgag
ggagctgggcagccgatgactggatctgcaatcacagatgtggttccagcaccaaagaac
ctggagttctcggaagttacccagaccagcttcagagcaacctgggagcacggggctcct
gatgttgctctgtaccgcatttcatggtctaagaaaggagaaggccaattcctagatgcc
attctgaacaatgatgagacaactcacgtcatggagaacctggagccagacacaccatac
gacgtgcgtgtgactgcaatttacccagatgagtcagagagcgaagatctgatgggcact
gagaggacattgcccaaggatggtactagaccactgccaagagcacctcccaccaactta
gtggtgtacaatgaaaccaccaccactctgaacgccaggtggactccacctacgggccgt
gtccagaactacaagatcacttacgtccccacggctggaggcaggagtcagactacccag
gtgggcgggaaaaagaccaatgtcctgcttcccaagctgacccctgacacagagtactca
attagcgttgctgcaatttacgccaccggagtcagcagggaccttaatggaattggaaag
accaaacctctgggtggtgttagaaacttgagagtaacagaccccactaccagcacattg
aacgtcctgtgggagccagctgagggaagtgtgcgtcagtacaggatctactacgtccct
gcagctggaggaagtgaagaaatggtccaagttccaggaagcacgtacaacacggttcta
aagaatctggattctgatacagtttacactgtatctgtggttccaatttatgctactgga
gatggacttcgtttgtctgagaacgggaaaacattggagcggagtccagtcaggaacatt
aaggtcttcaacccgacaaccaacactttgaatgttcgctgggaggcagccacaggtcca
gtccaacagtacagggtggtctatgctcctctgattggtaccagaccttctgagtcaatt
ttggtgccaggcaccaccaccacagctctgctgacacaactgctcccagataccgactat
aacgttgccgttgttgccttgtacagcgatggagaaggtcctgctgttagtgatgatgga
aagacactgccccgaggtggcccaagaaacatgcgtgtatatgaccccactaccaccact
ctttctgttagctgggaacatgcagaaggtccagtcatgcaatatcgcatcgcttacgcc
ccaactacaggagaccctattgaggaatatacttcagttcaaggcaacagaaacaatgtg
atcctccagaacttggatccagacacaccatacaacattaaagtgactgccatctacgct
gacggaccaggaggagagttggaaggaaatggacgcacagtgggaatgctgggccccaga
aatctccgtgtttctgatgagtggtacactcgcttcagggtgtcatgggaccccgctcca
tccagggttaatgggtacaagatcatctaccagcctgagggtactaatgacgtcttggag
gcatttgttggagacgtgacgtcacaccaattacaaaacctaaaaactggaacgacttat
gacttgaaggtgctggcccagtacaacacaggcttcagtggacctctaattggtcaagga
acgacattgtatctgaatgttactggcttatccacttacaatgttggatttgaatctttc
tgcctccgttgggcccctcacagagcagccacatcctacagactgaaagtcaatcccttt
gacacttctaagcgaggagctcaggaagtcacagtgcgaggctcagagagcaactattgt
tttgatggtttaagccctgacactctttacaatgccactgtgtatacccaaacacccaac
ctagagggacctggagtcagtgtcaaggagagaacattggtcaaacccaccgaggtgcca
actgagccgcccactcctcctcccccagcttcagtgccgcctgctttagatgtgtgcaaa
ggtgccaaagcagacctggtctatttaattgacggctcctggagtatcggagatgagagc
ttcaacaaagtcatccagttcaccacaaaaatgactgcagctttcgatgtcatcagcccc
agaggcatgcaggtttcattcgtgcagtacagcgatgatgccaagactgagttcaaactg
aacacctaccacgacaaaggaattgttttatcagctttgcagtcagttcgctacagagga
ggcaacaccaagactggtgtttctctgaagcatgtctacgagaaggtgttaacgtcagac
agtggcatgagaagaaacgtcccgaaagtgctggtagttgtcacagatggacgctcccaa
gacgaagttaagaagagtgcagagaaactgcagcactctggctacagtgtgtttgtggtt
ggcgtagctgatgttgacataagagaactgacggttatcggcagcaagcccactgagagg
cacgtgtttgtcgtcgacgactacgatgcttttgataaaatccaggataacctgatcacc
ttcatctgtgaaaccgccacatcaacttgccctctaatctacatcaatggatacaccaca
cctggcttcagaatgcttgaagctttcaacataacagaccggacattcgccggcatgaat
ggtgtgtccatggagactgggtcctttaacagctacattgcctacaggctgcacaaagat
tcttacctaacccaacccaccaaggagatccacccagatggtcttcccccatcttacacc
atcgtcctgctcctccgcctcttgccggatacgccctctgaaccttttgatgtatggcag
attgctgacaaaaacaacaaccctgaggtcggagtcacaatgaatccttccacccaaact
cttacgttctacaacaaggacacccgaggagagattcagagagctgtctttaatgaagcg
caagtgaagcgaattttccatggcagtttccataagattcacattaccatctcaccagaa
aaagtcaaactcactgtggactgccaagaggtggcagagaaacccatcaaggaggccaac
aacattacgctggagggctacgaagtgcttggcaagatggtcaagtcttcaggttcaaag
aagacctcagcaacattccagctccagatgttcgatattgtctgcagcttgagctggatt
agccgagacaaatgctgcgatctgccagccacacgagatgaggccaagtgtccttccctt
ccccactcctgtacttgtacacaggacagtatcgggccccaggggcctcctggaccttcg
ggcagtccaggtactaaaggacctcgaggagatagaggaacacctggcaaccctggtcca
atgggtccacgtggtgagtcaggagtcccaggtacgatggggccgccaggtccacaaggc
cctacaggactttctcggcctggagaacctggtcgcccaggacctaagggagatcgtgga
gatccaggcattactggtttgcaaggacctcctgggccacgcggtcctctgggccctgtt
ggaccaagcggagctcgggggccaccaggaaaagaggggacatctggacccagaggccca
ccggggcccatgggaagtcctggaaatccaggtataccaggaatcactggaaaaccaggc
aaaccaggagacccaggaagcccaggacttgttggccttaaaggagaaaagggagagaag
ggagactttgcatcccagaacatgatgcgttccattgccagacaagtttgtgaacagctt
gtgaacagccagatgagcagaattgatgtgctgctcaaccagattccctccggatatcgc
agcaacactcctggacctccaggtcttcccggccctcccggagagacaggatcccgagga
gagcccggacaacctggaagatctggattccctggaactccaggattacctggaaatcaa
ggagaaagaggtttaccaggagaaaaaggggaaagaggagccccaggaaacgatattaga
ggacaaagaggcccatctggaccaccggggccaccaggagagtcgaggacaggtcccccg
ggtccttctggttcctctgggcctcgtgggcctcaaggccgtcaaggtgttccaggtgtg
aggggaccaccaggcccccctggatactgcgactcctctcagtgtgtgggcattccatat
aatggacaaggatacacagccacccgctaccagcctgcatctgaggtagagactatacct
gtggagccagttggagaatttggagaatttgagacaatacagtcacgcggtgactccaga
ggccagcgaagacagaggtcactacaatcagacaatacaggaagactggcatcatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (7)   
   Pfam (7)   
All databases (24)   

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