KEGG   Poecilia reticulata (guppy): 103464300
Entry
103464300         CDS       T05149                                 
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
pret  Poecilia reticulata (guppy)
Pathway
pret03018  RNA degradation
pret03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pret00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103464300 (lsm3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103464300 (lsm3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pret03019]
    103464300 (lsm3)
   03041 Spliceosome [BR:pret03041]
    103464300 (lsm3)
Messenger RNA biogenesis [BR:pret03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103464300 (lsm3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103464300 (lsm3)
Spliceosome [BR:pret03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103464300 (lsm3)
 Complex C
  U2 snRNP components
    103464300 (lsm3)
SSDB
Motif
Pfam: LSM TIG_SUH DUF150_C vATP-synt_E Glutaredoxin
Other DBs
NCBI-GeneID: 103464300
NCBI-ProteinID: XP_008406517
UniProt: A0A3P9QG85
Position
LG5:1686462..1688957
AA seq 102 aa
MADEVEQQPTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgaagttgagcagcaaccaactaccaacacagtcgaggagccgcttgacctg
atcaggctcagtttggacgagcggatctatgtcaagatgaggaacgaccgggagctgcgg
ggccgtctgcatgcatatgatcagcacctgaacatgatcctgggggacgtggaggagacg
gtgacgaccgtggagatcgatgaggaaacgtatgaggaactctacaagtctacaaagcgg
aacatccccatgctgtttgtcagaggcgacggcgtggttctggtagctccgcccctcagg
gtgggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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