KEGG   Poecilia reticulata (guppy): 103473120
Entry
103473120         CDS       T05149                                 
Symbol
ythdc2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
pret  Poecilia reticulata (guppy)
Brite
KEGG Orthology (KO) [BR:pret00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pret03041]
    103473120 (ythdc2)
Enzymes [BR:pret01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103473120 (ythdc2)
Spliceosome [BR:pret03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    103473120 (ythdc2)
SSDB
Motif
Pfam: YTH HA2_C OB_NTP_bind Helicase_C R3H DEAD HA2_N AAA_19 Ank_2 ATPase nSTAND3 Ank AAA_22 PhoH Ank_5 Ank_4 AAA_30 SRP54 AAA_7 T2SSE CdiI_N Sigma54_activat
Other DBs
NCBI-GeneID: 103473120
NCBI-ProteinID: XP_008421311
UniProt: A0A3P9P806
Position
LG12:complement(592026..638444)
AA seq 1418 aa
MATNRQKLGGSLTFYSKCTMFNAMRAPQKPYRRQNMSPQGSGSSDSKTIHIGEEVKIAVN
LSLERFRYSDEKEMEFPSSLSSTERAFVHRLAQSLGYISKSKGKGSNRFLTVRKRDVSDK
PRPSTSLDLCPSSLYFIRSLLQRFPTSKKERADMHLNIKSGMSLATETNSGFDRNRASGR
LNNGIPMVPRKRAPSELDIFRSSLPVHEHQEEIVRLIRENRVVLVLGETGSGKTTQIPQF
LLDDCSRNGKPCRIFCTQPRRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLT
FCTSGVLLRTLMAGDTSLTTVTHVIVDEVHERDGLTDFLLTKMRDIVQRIPTLKLILSSA
ALDIDLFLQYFDSCPLIHLKGKQFEVKELFLEDILRQTGFNRKDIWKYQEETQRKEGKQK
RLTEWCETVESSSVGGKRTHMLAPGLLHAGSCGDREDEGSIKLNENDTDQLEPWLLREMD
SCISSIFLHEDQEAFNQLFNLILNESVPVDFMHSETGSTALMVSAARGFLPQTQQLLSMG
ADINIKASNGWTALDFAKHFQQTEAMDILKSSIPLGEVSSLEESALVQCSPTELSSEEQE
LLKQYHHSFDDQRVDLDLIMTLLHNICTTTTEGAVLIFLPGYDEIVSLRDRILFDDKRFS
THSESYQVFTLHSDMQTLDQKRAMKPAPSGVRKIILSTNIAETSITIDDVVFVIDSGKIK
EKSFDTLSRVSMLKTVWISKASVLQRKGRAGRCRPGICFHLFSRLRFNNMQQFQVPQLLR
MPLQELCLQTKLLAPSSCPVAEFLSKAPQPPPTHAIQSAVHMLKTIDALDQNEDLTDLGF
HLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFTLPAESSQKRAALQSRKRFT
SNTFSDHMALLRAFQAWQKARSEGWERSFCERNFLSQSTMDMILGMRTQLLGQLRAIGFV
RARGGSDIRDVNLNSENWAVVKAALVAGMYPNMVHVNKKTSLLSSNREKKVHFHPTSVLS
QLQLKENSSSKSGQTLPTDWLIYDEMSRGHRMASVRCCSVVTSITVAMFGGGTKLLSSTL
HESAIQKRYENLLDDMSDSDTEDLVEIKIDDWLVFGLERETAVLVSELRQKWQNLLIKRI
RCPSKPWSQQDEAVIQTLVSVLGAEEQEAGLQQPTGIGQRPRPMTSEDGPRSSGRNSKAS
PQLPSHNTNDKPRRMLSSDLLKTNSHRRDEVSLAIKKLWDYPSSSSSSSCSLTLDWPPES
PSRKLVLKSVSQKPTVPSVRYFIMKSNSIRNIEISQQKGIWSTTPSNETKLTQAFLANSF
IILIFSVQGSGHFQGYARMTSVVSQESCQDWGFMGLGGVFSVEWIHKESLPFPFTQHILN
SWNDNKRVQVSRDGQDLEPQAGSQLLSLWERTSGNRLH
NT seq 4257 nt   +upstreamnt  +downstreamnt
atggcaacaaaccggcagaagttaggaggttcactgacgttttactccaagtgcaccatg
tttaatgctatgagggcaccacaaaaaccatacaggcgtcagaacatgtcacctcaaggc
tccggttccagtgactcgaaaacaattcacatcggtgaagaagtcaagatagcagtaaac
ctctctttggagaggtttcgctacagtgatgaaaaagagatggaattcccatcctcactg
tccagcactgagcgggcctttgttcatcgactggcccagtccctgggctacatttccaaa
agcaaaggaaaaggctccaatcgttttctgacagtcaggaagagagatgtttcagacaaa
cctcggcccagtacatctctcgatctgtgccccagctccttatatttcatccgcagccta
ctgcagagatttcccaccagcaagaaggaacgtgcagacatgcatctcaacatcaaaagt
ggcatgtctctggctacagaaactaatagcggctttgacaggaacagagcaagtgggcgc
ctaaacaatggcattcctatggttcctaggaagagggcaccatcagaactggatattttc
cgaagctcccttcctgtgcatgagcaccaggaggagattgtccgactgatcagagaaaac
agggtggtacttgttttgggagagactggctctggaaaaactacacagattccccagttt
ttgttagatgattgtagcaggaatggaaaaccctgcaggattttctgtactcagcccagg
cgcctggctgccatcgctgtggctgagagagtcgcagcagagagaggggagagtgttggc
cagacagttggttatcacatcagactggaaagcagggtctcccccaagacgctgctaacc
ttctgcacaagtggagtcctcctcagaacactgatggcaggggataccagcctcacaact
gttacccatgtcattgtggatgaggttcacgagcgtgatggtctgactgacttccttctt
actaagatgcgggatattgtccagaggattcccacactgaagctgattctctctagtgca
gctctggatatagatctattcctccagtactttgactcctgccctttgatccaccttaaa
gggaaacaatttgaagtgaaagagctctttttggaggatatcttgaggcagacgggcttt
aatagaaaggacatctggaaatatcaggaagagactcagagaaaagaggggaagcagaaa
cgattgacagagtggtgtgaaacagtggagagcagttctgttggtgggaaacggacccac
atgttggctccaggcttacttcatgccggcagctgtggggacagagaagatgagggctca
attaagctgaacgaaaatgacacagatcagcttgaaccatggctgctgcgggagatggac
tcctgcatttccagcattttcctgcatgaagaccaggaggctttcaatcagctcttcaac
ctcattctaaatgaaagtgtccctgtggacttcatgcacagtgagaccggctccacggct
ctgatggtgtcagcagcgcggggattccttccacaaacgcagcagctgctcagtatgggt
gctgatatcaacataaaggcatctaacgggtggactgctttagactttgctaaacacttc
cagcagacagaagcaatggatatcctcaaatcttcaatacctttgggggaagtgagcagc
ctggaggaatcagcgttggtacagtgcagtcctacagagctgagcagtgaagaacaagag
cttctcaaacagtaccaccacagctttgatgaccagcgggtggacttggatctcatcatg
acattgctccacaacatctgcaccaccactactgagggtgctgtcctcatatttcttcct
ggatatgatgaaattgtgtcattgagagatcgcatcctctttgatgataagaggttctcc
actcactctgagagttaccaggttttcactctgcattctgacatgcagactctggatcag
aaaagagccatgaaaccagctccatctggtgtccggaagataattctctctactaacatt
gctgaaacaagcattactattgatgacgtagtcttcgttattgattcaggaaagatcaaa
gagaaatcctttgatacgctgagtcgggtttctatgttaaagacggtttggatctcaaaa
gccagtgttttgcaaagaaaaggaagagctggccgctgtagacctgggatttgcttccat
ctcttcagtcgtctcagattcaacaatatgcaacagttccaggttccacagctgcttcgg
atgccactgcaggaattgtgtctacagaccaagctgttggctccttcatcctgccccgtt
gccgagttcttatctaaagctccacagccacctcccacacatgcaatccaaagtgctgtc
cacatgctaaagacaatagatgctctggaccagaacgaagacttaaccgacctgggcttc
cacctggctgatctacctgtggagccccatctgggcaaaatggtgttgtgcgctgttgtg
ctcaagtgtctggaccccattctcaccattgcctgtactctggcctatcgtgaccctttt
accctccctgctgaaagctcccagaaaagagctgctctgcagagccgcaaacgtttcacg
tccaacaccttcagcgaccacatggccctgctcagagctttccaggcatggcagaaagct
cgcagtgaaggctgggagagatccttctgtgaaaggaacttcttgtcccagtctacaatg
gacatgattcttggcatgaggacacaactgttgggacaacttcgtgctattggttttgtg
cgcgcccgtgggggcagcgacatccgtgatgttaatctgaactctgaaaactgggctgtc
gtgaaagcagccctggtggctggaatgtatccaaacatggttcatgtcaacaagaagacc
tctctgctctccagtaacagagagaagaaggttcatttccatcctacatcagtcctgagc
cagctgcagttgaaggagaacagcagctccaaatcaggtcagaccctccccacagactgg
ttgatctatgatgagatgagcagaggtcacaggatggccagtgtccgatgttgctccgtg
gtgacctccatcacagtggccatgtttggaggtggtaccaaacttctcagctccacactt
catgaaagtgctattcaaaaaagatatgaaaatcttctggatgacatgagtgacagtgac
acagaagacttagtggagataaagattgatgactggcttgtcttcgggcttgagagagag
actgcagtactggtgtctgaactcagacagaagtggcagaacttgcttataaagaggatc
cgctgtccttccaaaccctggtctcagcaggacgaggcagtcatccagaccttagtgtct
gtgctgggtgctgaggagcaggaagctggcctgcagcagcctacagggattggtcagagg
cctaggcctatgacatccgaggatgggccaaggtcatcagggaggaactccaaggccagc
ccccagctgccctctcataacacaaatgacaaacctcgtcgaatgctgtcttctgacctg
ctgaagactaactcccacaggagagatgaagtctcactggccatcaagaagctgtgggat
tatccgtcttcctccagtagttcttcctgctctttaactctggattggccccccgagtct
ccctcaagaaagctggtcttaaagtctgtgtctcagaagccgactgtgccatcagtccga
tacttcattatgaagagtaacagcatcagaaacatagagatttctcagcagaaaggcatc
tggtctactacaccgagcaacgagaccaaactcacccaagctttcctggcaaatagcttc
ataattctcatcttctctgttcagggatctggacacttccagggctacgctcgcatgaca
tctgtcgtcagccaggagagctgccaggactggggcttcatggggctcggaggagttttc
agtgtagagtggatccataaagagagtcttcccttccccttcacccagcacatcctcaac
tcatggaatgacaacaagagagttcaagtcagcagggatggacaggacttggagcctcag
gctggcagccagttgctgtctctgtgggagaggacttctgggaatcggcttcattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (22)   
   Pfam (22)   
All databases (36)   

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