KEGG   Pseudomonas rhizosphaerae: LT40_00485
Entry
LT40_00485        CDS       T03339                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
prh  Pseudomonas rhizosphaerae
Pathway
prh03030  DNA replication
prh03430  Mismatch repair
prh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:prh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LT40_00485
   03430 Mismatch repair
    LT40_00485
   03440 Homologous recombination
    LT40_00485
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:prh03032]
    LT40_00485
   03400 DNA repair and recombination proteins [BR:prh03400]
    LT40_00485
Enzymes [BR:prh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LT40_00485
DNA replication proteins [BR:prh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     LT40_00485
DNA repair and recombination proteins [BR:prh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     LT40_00485
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon tRNA_anti_2
Other DBs
NCBI-ProteinID: AIS15961
UniProt: A0A089ZPI9
Position
101052..104573
AA seq 1173 aa
MSVSFVHLRLHTEYSLVDGLVRIKPLVKALAGMNMPAVAVTDQNNMCSLVKFYKAAMGAG
IKPICGADLWLANRDPDGPLSRISLLAMNAVGYRNITELISRGFIEGQRNGQVIVERQWV
AEASEGVICLSAAKEGEIGMALLGGYPGDADNLLREWMAIFPERFYVEVQRTNRTNDEEY
LHAAVALADRLGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRNKNYSDQQYLK
SAEEMAELFSDLPEALENTVEIARRCNIDVKLGKHFLPDYPIPDGMTIDEYFRKVSFDGL
EERLAVLLPKDTTENYEERRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
ADKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAFEQE
EILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFAPIYCDEAGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLDIAFIPLDDKPTYQ
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIDGCATNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVTLIEELRSMKLRLDAPDVNNSEFKFTVNDDGRIVYGLGAI
KGVGEGPVEAIIEARQAGPFKDLFDFCERVDLKRINKRTLDGLIRSGAIDRLGPHFHEET
KAYQANIDRNRAVLLSAMEGAIKAAEQTARTHDSGHNDLFGGVFVEADADVYASHRKAKE
LTLKERLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPSRETQTVAGMVIALRVM
KNKKGDKMGFITLDDRSARIEASLFADAFMSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKVHADGLGGDRLGWLGELCRQHRGACPITMEYTSSDAKAT
LQFGEGWRIDPGDSLIQALRDQFGRENVFLQYR
NT seq 3522 nt   +upstreamnt  +downstreamnt
atgtcggtttccttcgttcatcttcgcttgcacaccgaatactcgctggtcgacggcctg
gtgcggatcaagccgctggtcaaggcgctggccggtatgaacatgcctgcggtggcggtg
accgatcagaacaacatgtgttcgctggtgaagttctacaaggccgcgatgggcgccggc
atcaagccgatctgcggcgccgacctgtggttggccaatcgcgaccccgatggccctctg
agtcgcatcagcctgctggcgatgaacgccgtgggttatcgcaacataaccgaactgatt
tcccgcggcttcatcgaaggccagcgcaacggccaggtgatcgtcgagcggcagtgggtg
gccgaagctagcgaaggcgtgatctgcctgtcggcggccaaggagggcgagatcggcatg
gccctgctgggcggctatccgggcgacgccgacaacctgttgcgcgagtggatggcgata
tttcccgagcgtttctacgtcgaggtgcagcggaccaatcgcaccaacgacgaagagtac
ctgcatgcggccgtcgccctggccgaccgcctgggtgcgcctctggtggcgaccaacgat
gtgcgcttcatcaagcaggaagatttcgaggcccacgagacccgcgtgtgcatcggtgaa
ggccgcgcgctggacgacccgcgccgcaacaaaaactacagcgaccagcagtacctcaaa
agcgcggaagagatggccgagttgttcagcgatctgcccgaggcgctggaaaacaccgtc
gagatcgccaggcgctgcaacatcgacgtcaagctgggcaagcacttcctgcccgactac
ccgattcccgatggcatgaccatcgatgagtacttccgcaaggtctcgttcgacggcctg
gaagaacgccttgccgtgctcttgcccaaggacaccaccgagaactacgaagagcggcgg
caggtgtatgtcgaccgactgaatttcgagctcgacatcatcatccagatgggctttcca
ggttacttcctgatcgtgatggacttcatccagtgggccaagagcaatggcgtgccggtg
ggtccgggccgggggtcgggcgctggctccctggtagcctatgtccagaagattaccgac
ctcgacccgctggaatacgacctgctgttcgaacgctttctcaaccccgagcgggtttcc
atgcccgacttcgacgtcgacttctgcatggatggccgcgaccgggtcatcgactacgtg
gcggacaagtatggccgcaacgccgtgagccagatcatcaccttcggctccatggcggcc
aaggcggtggtgcgcgacgtggcacgggtgcagggcaagtcctacggcctggccgaccgc
ctgtccaagatgatcccgttcgaagtcggcatgaccctggaaaaggccttcgagcaggaa
gagatcctgcgcgacttcatcaaggtcgatgaggaagcggcggaaatctgggacatggcg
cgcaagctcgaaggtgtggtgcgtaacgtcggcaagcacgccggtggtgtggtgatcgcg
ccgaccaaactcaccgacttcgcgccgatctactgcgacgaggccggcgacggcctggtg
acccagttcgacaaggatgacgtggaggccgccggcctggtcaagttcgacttcctcggc
ctgcggaccctgaccatcatcgactgggcgttgaagaccatcaaccgcgaccgcgccaag
gtcaacgaagcgccgctggacatcgccttcattccgctcgacgacaaaccgacctaccag
ttgctgcagaaggccgagaccaccgcggtgttccagctcgagtcgcgcggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagaccttatcgccctggtggcgctgttc
cgcccaggcccgctgcagtcgggcatggtggatgacttcatcaaccgcaagcacggccgc
gccgagctggcctatccgcactcggactaccagtacgaagggctgaaaccagtcctggct
cctacctacggcatcattctgtatcaggaacaggtgatgcagatcgcccaggtgatggcg
ggctacaccctcggtggtgccgacatgctgcgccgcgccatgggcaagaagaagcccgag
gagatggccaagcagcgcggcggcttcatcgatgggtgcgcgaccaacaacatcgacccg
gacctggcaggcaacatcttcgacctggtggaaaagttcgccgggtacggtttcaacaag
tcccactccgccgcctatggcctggtgtcgtaccagaccgcctggctcaagacccactac
ccggcgccgttcatggctgcggtgctgtcggcggacatgcacaacaccgacaaggtcgtg
accctcatcgaagagttgcgcagcatgaaactgcgcctggatgcacctgacgtgaacaac
tccgagttcaagttcacggtcaacgacgacggtcgcatcgtctacgggctgggcgcgatc
aagggcgtgggcgaaggcccggtggaggcgatcatcgaggcgcgccaggccggtccgttc
aaggacctgttcgacttctgcgagcgcgtcgacctcaagcgcatcaacaagcgcaccctc
gacggtctgatccgcagcggcgcgatcgaccgcctgggtccgcatttccacgaagaaacc
aaagcctaccaggccaacatcgaccgcaaccgcgcggtgctgctgtcggccatggaaggc
gcgatcaaggcggcggagcagacggcacgcacccatgacagcggccacaacgacctgttc
ggcggcgtgttcgtggaggccgatgcggatgtctatgccagccatcgcaaggccaaggag
ctgaccctcaaggagcggctgcgcggcgagaaggaaacccttgggttgtacctcaccggg
cacccgatcgacgaatacgaaggcgagatccgccgcttcgcgcggcaacgcatcatcgac
ctcaaaccatcgcgcgaaacccagacggtggccggcatggtcatcgccctgcgggtgatg
aagaacaagaaaggcgacaagatgggcttcatcaccctcgacgaccgctcggcgcgcatc
gaggcctcgctgttcgccgatgccttcatgtcggcgcaatcgctgctgcagaccgatgcc
atggtggtggtggaaggggaggtcagcaacgacgacttctctggtggcctgcgcctgcgc
gtcaagcgcgtgatgagcatggaagatgcgcgcaccaacctggccgaaagcttgcgcctc
aaggtgcatgccgacgggctgggtggcgatcgtctcggctggctgggcgaattgtgccgt
cagcaccgtggcgcttgcccgattaccatggaatacaccagcagcgatgccaaggcgacg
ctgcagttcggcgaaggatggcgtatcgacccgggcgacagcttgattcaagcgctgcgt
gaccagttcggccgtgagaacgtctttctgcaatatcgttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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