KEGG   Planococcus rifietoensis: AUC31_05380
Entry
AUC31_05380       CDS       T04201                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
prt  Planococcus rifietoensis
Pathway
prt03030  DNA replication
prt03410  Base excision repair
prt03420  Nucleotide excision repair
prt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:prt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AUC31_05380 (ligA)
   03410 Base excision repair
    AUC31_05380 (ligA)
   03420 Nucleotide excision repair
    AUC31_05380 (ligA)
   03430 Mismatch repair
    AUC31_05380 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:prt03032]
    AUC31_05380 (ligA)
   03400 DNA repair and recombination proteins [BR:prt03400]
    AUC31_05380 (ligA)
Enzymes [BR:prt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AUC31_05380 (ligA)
DNA replication proteins [BR:prt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AUC31_05380 (ligA)
DNA repair and recombination proteins [BR:prt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AUC31_05380 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AUC31_05380 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AUC31_05380 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AUC31_05380 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH RNA_pol_A_CTD BRCT_2 zf-NADH-PPase RNA_ligase
Other DBs
NCBI-ProteinID: ALS74690
UniProt: A0A0U2J6V6
Position
690134..692140
AA seq 668 aa
MDRIKAEERVTELNELLRNYGHAYYVLDKPSVPDAVYDQLLNELIELENLYPDLIFPDSP
TQRVGGTPLSNFEKVRHERPMLSLSNVFNEEDLRDFDKRVRGGAGDSVEYVCELKIDGLA
VSLHYENGKFVRGLTRGDGRVGEDITVNLRTVRSIPLKLKEPVSIEVRGEVFMPKKSFHA
LNEDREERGEELFANPRNAAAGSLRQLDSKIAAKRNLDVFIYGIGGDGETYGLNNHNESL
QYLTDLGFKTNGERKVCRSVEEVLAYIEQWTDGRNQLSYEIDGIVIKVNRFLHQQDLGFT
AKSPKWATAYKFPAEEVMTTVRDIELSIGRTGVVTPTAILEPVAVAGTTVQRASLHNEDL
IRERDIRINDKVIIRKAGDIIPEVVKALIEMRSGDELPFEMPTECPACASELVRIEGEVA
LRCVNPKCPAQIVEGMIHFVSRNAMNIDGLGEKVIEQLYREGLIHDISDLYALTKEQLLE
LERMGDKSATNLIEAIAASKSNSMERLLFGLGIRHVGERGARILSEHFGSMDQLMQANLE
ELIAIHEIGDKMADAVVTYFEKEEVAALVERLRERGVNLSYTGTIVRVEEGANAFAGKKI
VLTGKLENMTRQEAGERIEALGGKLTGSVSKKTDLLIAGEEAGSKLDKAQDLGVEVWNEE
RLLMELNE
NT seq 2007 nt   +upstreamnt  +downstreamnt
atggaccgcatcaaagctgaagaacgtgtaaccgaattgaatgaattgctccggaactac
gggcatgcctattatgtgctcgataagccaagcgtgccggatgccgtgtacgatcaattg
ctcaacgaattgatcgagctggagaacctatatcccgatttgattttcccggactcccca
acgcaacgggtcggggggacacccttgtcgaatttcgagaaagtccgccacgagcggccg
atgctcagtttgtcgaacgtctttaacgaagaagatttgcgtgatttcgataaacgtgtg
cgcggcggtgccggggactcggtcgaatatgtgtgcgaactgaaaattgacggcctggcc
gtttcgcttcattacgaaaacggcaaattcgtgcgcggtttgacgcgcggcgacggccgt
gtcggagaagacattacggtcaacctccgcacagtccgctcgattccgcttaaattaaaa
gagccggtatcgatcgaagtgcgcggcgaagtgttcatgccgaaaaaatcgttccatgca
cttaatgaagaccgcgaggagcggggcgaagaattattcgccaatccgcgcaatgctgca
gccggttctttgcgccaattggattcaaaaattgccgctaagcgcaatttggatgtcttc
atctacggcattggcggagacggggaaacttacggcttgaacaaccataacgagtccctt
caatatttgacggatctcggctttaaaacgaacggcgagcggaaagtttgtcgctcggtg
gaagaagtgctggcatacattgagcaatggacagatgggcgcaaccagttgagctatgaa
attgatggcatcgtcattaaagtcaatcgctttttgcaccagcaagacctcgggttcacg
gcaaaaagcccgaaatgggcgaccgcctataaattcccggcagaagaagtgatgacgacc
gtacgtgatatcgagctgagcataggccggaccggcgtcgtcaccccgacagctattctt
gagcctgtcgctgttgccggcaccacggtgcagcgtgcgtctctccataatgaagacttg
atccgggagcgcgatatccgcatcaatgataaagtgatcatccgaaaagcgggcgatatc
attccggaagtcgtcaaggcgctgattgaaatgcgctccggcgacgaactgccgtttgaa
atgccgaccgaatgccccgcatgcgcaagcgaattggtccgcattgaaggggaagtggcg
ctgcgctgcgtcaacccgaaatgcccggcgcaaatcgtcgaaggcatgatacatttcgtt
tcgcgcaatgccatgaatattgacgggctcggtgagaaagtgatcgagcaattatatcgc
gaagggctcatccacgatatttcggatctctatgctttgacgaaagagcaattgttggaa
ctcgagcgcatgggcgataaatccgccaccaacttgatcgaggcgatagcagcttccaag
agcaattcgatggaacgcttgttgttcggccttggcattcgccacgtcggtgaacgcggg
gcgcgcatcttgtcggagcatttcggctcgatggatcaattgatgcaggcaaacttggaa
gaattgattgccatccatgaaatcggcgataagatggccgatgcagtcgtcacctatttc
gaaaaggaagaagttgcagcacttgtggaacgtttacgcgagcgaggcgtcaatttatcc
tacacgggcacaatcgtccgcgtagaagaaggcgccaatgcgtttgccggcaagaaaatc
gtgctgaccggtaagttggaaaacatgacccgccaggaagccggcgaacggatcgaggca
ctcggcggcaaattgaccggcagcgtcagcaagaaaaccgatttgctgattgccggcgaa
gaagccgggtccaaactcgacaaagcgcaggatctcggcgtagaagtgtggaacgaagaa
cgcctgcttatggaattgaacgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (32)   

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