KEGG   Paenibacillus sabinae: PSAB_21700
Entry
PSAB_21700        CDS       T03064                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
psab  Paenibacillus sabinae
Pathway
psab03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PSAB_21700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psab03021]
    PSAB_21700
   03400 DNA repair and recombination proteins [BR:psab03400]
    PSAB_21700
Enzymes [BR:psab01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PSAB_21700
Transcription machinery [BR:psab03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PSAB_21700
DNA repair and recombination proteins [BR:psab03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PSAB_21700
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid
Other DBs
NCBI-ProteinID: AHV99229
UniProt: X5A615
Position
complement(4699408..4703022)
AA seq 1204 aa
MLDVNNFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQASMGAEAVKKLLQ
DLDIEKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEKGSGMILRTVNEAVSAYQRGTAGLHARVAIP
VKALNKTSFTEKQQNAMLITTVGKIIFNEIFPESFPYINEATRDNLLQGTPERYFIYEKG
ANIPELLDAVPIAGAVGKEYLGSIIARCFEIYHTTKTSVILDKIKQLGFTYSTRAGVTIA
VSDVIVPEEKKAILKESEEKVDIVAKQYRRGLITNEERYDRVIEIWSKTKDDLTNVLMKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYCFETVRHPETGEIIVHRNDLIDSDKAEEIVNAGVSKLQIRSVLSCRARHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVIKEIREAKDRREIEVQGEAESKVYSITYGSRLRVSEGQEIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIKQMLRKIRI
IDAGDTNLLPGSFADIHEYEAANKEAILSGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRNVKLINPEEEQDEVEALET
VPAE
NT seq 3615 nt   +upstreamnt  +downstreamnt
ttgttggacgttaacaattttgaatttatgaaaatcgggctggcttccccggagaagatt
cgttcttggtcccgcggagaagttaagaaaccggaaaccatcaactatcgcacactcaag
ccggagaaagagggtcttttctgcgaacggatcttcggaccgcaaaaggactgggagtgt
cactgcggcaaatacaaacgcgtccgttataaaggcgtagtctgtgaccgctgcggcgtt
gaagttacacgcgccaaagtgcgccgcgagcgtatgggccatattgagctcgccgctccg
gtatcccatatctggtatttcaaaggcattccgagccgcatgggtctggctcttgatatg
tccccgagatcgctggaagagattatttatttcgcatcctatgttgtaaccgaccctggc
gatacgcctctggagaagaaacagctgctgtccgagaaggaataccgcagctaccgcgag
aagtacggttacggcttccaggcgagcatgggcgcagaagcggtcaagaagctgcttcag
gatctggatatcgaaaaagagctggagttccttaaggaagagctgcgcaccgcccaaggc
caacgccgcaaccgtgcgatcaagcgccttgaagtcatcgaagctttccgcaactccggc
aacaagcccgactggatgatcatggacgttctcccggttattccgccggaactgcgtccg
atggtacagctggacggtggacgttttgctacgtctgacctgaacgacctgtaccgccgc
gtaatcaaccgcaacaaccgtctgaaaagactgctggaccttggcgctccggatatcatc
gtgcagaacgagaaacggatgcttcaggaagctgtcgacgctttgatcgacaacggccgc
cgcggccgcccggtaacgggtccaggcaaccgtccgctgaaatcgctcagccatatgctg
aaaggtaagcagggccgtttccggcagaacctgctcggtaaacgggtcgactattccggc
cgttccgttatcgtcgtaggtccttacctgaaaatgtaccaatgtggtctgcctaagaaa
atggcgctggagctgttcaagccgttcgtcatgaaagagctggtcaacaaggggcttgcc
cacaacatcaagagcgcgaaacgcaaagtcgagcgcgtcagcccagaagtttgggacgtt
cttgaagaggtaatcaaagagcatccggttctcctgaaccgtgcccccacgcttcaccgt
ctcggtatccaggcgtttgaaccgattctggtggaaggccatgccattcgtcttcacccg
ctcgtatgtacggcttacaacgccgactttgacggtgaccagatggccgttcacgttccg
ctgtccgcagaagcacaggcggaagcccgcatcctgatgctggcgtcgggcaacattctg
aacccgaaagacggtaagccggttgttaccccttcccaggatatggttctcggttccttc
tatctgaccatggacaacaaggaagaaaagggcagcggcatgattctccgtaccgtgaac
gaagcggtctccgcttaccagcgcggcactgcaggtcttcatgcgcgtgtagccatcccg
gtcaaggcgcttaacaagaccagcttcaccgagaagcagcagaatgccatgctgatcaca
acggtcggcaagatcattttcaacgagattttcccggaaagcttcccgtatatcaacgaa
gcgacccgtgacaatctgctgcagggaacgcctgagagatatttcatctacgaaaaaggc
gccaatatccctgaactgctcgatgcggttccgattgcgggcgctgtcggcaaagaatat
ctgggctctatcatcgcccgttgtttcgaaatttaccatacgaccaaaacatcggtcatt
cttgataaaatcaagcagcttggcttcacttactctacccgtgcaggtgtaacgatcgcc
gtatcggacgtaatcgtgccagaagagaagaaagccattctgaaagaatccgaagagaag
gtcgacattgttgccaagcagtaccgccgcggtctgattaccaatgaagaacggtatgac
cgtgtaattgaaatctggtccaagaccaaagacgatctgacgaacgtcctcatgaagtcg
atggaccgtttcaactccatcatgctcatggttgactctaaagcccggggtaacaagtcg
cagatcacccagctgggcggcatgcgcggactgatggcgacgccgtcgggccgtatcttc
gaacttccgatcaaagcgaacttccgcgaaggtctgaccgtcttggagtactttatctcc
actcacggcgcgcggaaaggtctggccgatacggcgcttcgtaccgccgactccggttac
ttgacccgtcgtctcgtcgacgtggcccaagacgtaatcgtccgcgaagaagattgcggc
acggacaaaggctttaccgtaagccgtattcaggacggcaaagaggttatcgaggatctg
tacgaccgtattgaagggcggtattgctttgagaccgtccgccatccggagactggtgaa
atcatcgtgcaccgcaacgatctgatcgattctgacaaagcggaagagatcgttaatgcc
ggagtaagcaagctgcaaatccgttctgtgctgagctgccgcgcccgtcacggcgtctgc
aagaaatgctacggacgcaacctggcgaccggcaagcacgttgagatcggcgaagccgtc
ggcattatcgccgcgcagtccatcggtgaacccggaacgcagcttaccatgcgtacgttc
cataccgggggcgttgcgggcgacgatatcacgcaaggtcttccgcgtattcaggagttg
ttcgaggcccgtaatccgaaaggccaggcgacaatcagtgaaatcgacggcgtgatcaag
gaaatccgcgaagcgaaggaccgccgcgaaatcgaggttcaaggcgaagcggaatccaag
gtgtactccatcacttacggttcccgcctgcgcgtaagcgaaggccaggagatcgaagcc
ggagacgagttgaccgacggctccatcgacccgaaagagatgctgcgcatcaagggtatc
cgcggggtgcagaactacattctgcaggaagtacagcgtgtataccggaaccagggcgta
gaaatcaacgacaagcacgttgaagtcatgatcaagcagatgcttcgcaaaatccgcatc
atcgacgccggcgacacgaatctgctgcccggatcgttcgcggatatccatgaatacgaa
gcggccaacaaggaagcgatcctgtccggcaaagagccggccgtggcgaagcctgtgctg
ctgggtattaccaaagcatcgcttgaaacggactccttcctctccgcggcatcgttccag
gagacaacgcgcgtgttgaccgacgccgccatcaagggcaaagtcgaccaactgcttggt
ctcaaagagaatgttattatcggtaagctgattcctgccggaacgggcatgaaccgctac
cgtaatgtaaaactgatcaacccggaagaagagcaggatgaagtggaagctttagaaacg
gttcctgccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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