KEGG   Piscirickettsia salmonis: PSLF89_4
Entry
PSLF89_4          CDS       T03982                                 
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
psal  Piscirickettsia salmonis
Brite
KEGG Orthology (KO) [BR:psal00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psal03032]
    PSLF89_4 (gyrB)
   03400 DNA repair and recombination proteins [BR:psal03400]
    PSLF89_4 (gyrB)
Enzymes [BR:psal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     PSLF89_4 (gyrB)
DNA replication proteins [BR:psal03032]
 Prokaryotic type
  DNA Topoisomerases
   PSLF89_4 (gyrB)
DNA repair and recombination proteins [BR:psal03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      PSLF89_4 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3 UFD1
Other DBs
NCBI-ProteinID: AKP72225
Position
complement(3178620..3181031)
AA seq 803 aa
MTENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSTV
EVIIHSDESITVRDDGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDSSSYKVSGGLHGVG
ISVVNALSDQLKLTIYKNGKVYQQNYVVGEPQEPLSVIGESKRQGTEIRFHPSPATFTNI
EFHYEILAKRLRELSFLNSGVKITLFDERSDKKDAFFYEGGIKAFVEHLSRNKTPIHNEV
ICFDGEKNEVQVSAALQWNESYQENIFCFTNNIPQRDGGSHLAGLRAALTRTLNQYIEAE
GFAKKAKINATGDDAREGLVVVLSVKIPDPKFSSQTKEKLVSSEVKPIVESLITEKLKEF
LSEQPQEAKAIVGKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSEL
YLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMISSAEVGTLITALGCGIRN
DDYNPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYLYIAQPPLYKVKKG
KQEYYVKDDAALSDYLTQIALENAQLFVHKDAPAITGGQLANLVQQYKKGAEIIQRLSKR
YPAIFLQALVDLPALTDVLFADQAYIATWTQQLQDWLQSHESQVEFKVGYRQSVDDGAAV
LDICQTLHGVDTHYLIRADFFTSKEYGVLTQLGGALQGLLETGAFIQRGERVHFVSRFNQ
VIDWLMSEAKRGQNIQRYKGLGEMNPDQLWETTMNRETRRMLQVTIEDAVAADELFTTLM
GDHVEPRREFIETNALQVSNIDV
NT seq 2412 nt   +upstreamnt  +downstreamnt
atgactgagaatacatacgactcgtcaaatattaaagtgctaaaagggttggatgcggtg
cgtaagcgtccagggatgtatattggcgatacggatgatggaactggcttgcaccatatg
gtctttgaagtggtggataattccattgatgaggcgttggcggggcactgctccaccgtt
gaggtgattattcattcggacgagtcgatcactgtccgtgatgatggtcgaggtattcct
gttgatatccatccagaagaggggcgctcagctgcagaagtgattatgaccgtgttgcac
gcgggtggtaaatttgatagtagttcatataaagtctctggtggcttgcatggtgttggg
atctctgttgttaatgccttatctgatcagttaaagctaacgatttataaaaatggcaag
gtttatcaacaaaactatgtggttggcgagccacaagaaccacttagtgtcattggtgag
agtaaacgccaaggaacggagattcgctttcatccaagccctgcgacctttactaatatt
gagtttcactatgagattttggcaaagcgtttaagagagttatcttttttaaattcagga
gtgaaaattacattatttgatgagaggtcggataaaaaagatgcgtttttctatgaaggt
gggattaaagcctttgttgagcacttaagtcgcaataaaacgccaattcataatgaagtc
atttgctttgatggtgaaaaaaatgaggttcaggtctctgcagctttacagtggaatgag
tcctatcaagagaatattttttgttttactaataatattcctcaacgtgatggcggctcg
catttagctgggttacgtgcggcattaacgagaacattaaatcaatatatcgaagcggaa
gggtttgctaagaaagctaaaatcaatgcaaccggtgatgatgcacgtgagggactagtt
gtggtgttatcggtgaagattccagatccaaagttctcatcacaaactaaagagaagtta
gtctcttctgaagtaaaacccattgttgaaagcttgataacagaaaagcttaaagagttt
ttatctgaacagccgcaagaggcgaaagcgattgtcggcaaaattattgatgcggcgcgc
gcgcgcgaggcagcgcgtaaagcacgggagatgacacgccggaagggggcgctggatatt
gcggggctgccgggtaagttagctgactgtcaggaaaaagatcccgcacagtctgaatta
tatcttgttgagggagattctgctggtggctcggcgaaacagggacgagatcgtcgcaca
caagctattttgccgttaaagggtaaaatcttaaatgttgaaaaagcacgttttgacaag
atgatttcttctgcagaagttggcacgctgattacagccttaggttgtggtattcgcaat
gatgattataatccggataaaacgcgttatcatcgcattattattatgaccgatgcggat
gttgacggttctcatattagaacattgctgttaacttttttttatcgacaaatgccagaa
ttgattgagcgtggttatttatatatcgctcaacctcctctttataaagtgaaaaaaggc
aagcaagaatactatgtaaaagatgatgcagctctatctgattatttaactcagattgcc
ttggaaaatgcacagttatttgtgcataaagatgcgccagcgatcactgggggacaattg
gcaaacttggttcaacaatataaaaagggtgcagagattattcagcgtttgtctaagcgt
tatcctgcgatctttttgcaagctctggttgatttgcctgcgcttacagacgttttattt
gccgatcaggcatatattgctacgtggactcagcaattgcaagactggttacaatcacat
gaaagtcaggtggagtttaaagtcggctatcgtcaaagcgtagatgacggagcagcggtg
cttgatatttgtcagacgttgcatggtgttgatacccattatttgattcgtgccgatttt
tttacttcgaaagagtatggtgtgctgacgcagctcggcggtgctttacagggactatta
gagacaggtgcatttattcagcgtggtgagcgtgtgcactttgtcagtcgctttaatcag
gtgatcgattggttgatgagtgaggccaaacgtggtcaaaatattcagcgttataagggc
ttgggtgaaatgaatccagatcagttatgggaaacgacaatgaacagggaaacgcggcgt
atgcttcaggtgactattgaagatgctgtggctgctgatgagctgtttacaaccttgatg
ggcgaccatgtcgagccacgccgtgagtttattgagacaaatgcactgcaagtgtctaat
atcgatgtttaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (44)   

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