KEGG   Pseudomonas syringae pv. syringae B728a: Psyr_0572
Entry
Psyr_0572         CDS       T00246                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
psb  Pseudomonas syringae pv. syringae B728a
Pathway
psb02024  Quorum sensing
psb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Psyr_0572
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Psyr_0572
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psb03019]
    Psyr_0572
   03036 Chromosome and associated proteins [BR:psb03036]
    Psyr_0572
Messenger RNA biogenesis [BR:psb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Psyr_0572
Chromosome and associated proteins [BR:psb03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Psyr_0572
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AAY35642
UniProt: Q4ZYY0
Position
650619..650879
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSATDADGADAEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacctgaataccttgcgtaaagagaaggtc
ggggtatcgatctatctggtcaacggtatcaagctgcagggtacgatcgagtctttcgac
cagttcgtcattttgctgaagaacacggtcagccagatggtctacaaacacgccatttcc
accgtcgtaccggttcgtccgatccgcctgccaagcgctacagacgctgacggcgcggac
gccgagccaggtaacgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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