KEGG   Pseudogulbenkiania sp. NH8B: NH8B_3123
Entry
NH8B_3123         CDS       T01619                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pse  Pseudogulbenkiania sp. NH8B
Pathway
pse03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pse00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NH8B_3123
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pse03019]
    NH8B_3123
   03016 Transfer RNA biogenesis [BR:pse03016]
    NH8B_3123
Enzymes [BR:pse01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     NH8B_3123
Messenger RNA biogenesis [BR:pse03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NH8B_3123
Transfer RNA biogenesis [BR:pse03016]
 Prokaryotic type
  tRNA degradation factors
   NH8B_3123
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 OB_Dis3 TMEM240
Other DBs
NCBI-ProteinID: BAK77899
UniProt: G2IXG6
Position
complement(3297580..3299799)
AA seq 739 aa
MPSKQKKQKNASLRLQDPHLEREKLKYDNPLPSREFVIQLLTEQGVPLWQDELAQMLDIK
KDEFRYFERRLQAMERSGEIIINRKGAICVAEKLELIKCKVSGHRDGYGFAIPEEAGVED
VFLSEREMHKVLHGDRVMVSITGTDKRGRNEGRIVEVLERAVQKLVGRIYLSRGVWLVVA
EDKRINQDILIEPGGEGGAQHGQVVIVEISSQPDSYRQPIGRVVDILGNYADPGMEIEIA
LRQHDLPHVFSDAAVEQAQETPKKVRKSDHKGREDLRELPLVTIDSETARDFDDAVFAER
VDNGYRLVVAIADVSHYVKPGDALDQDAVERGTSVYFPRRVIPMLPEALSNGICSLNPDV
ERLCMVCDMQISTKGEVKQYRFYPAVMQSKARLTYNAVWDWLQHGSDHPMLPNLQTLYSL
FKVLLAAREERGAIEFDSTETQMVFNESGKIDKIVPVVRNDAHRLIEECMLAANVCAADF
LLKHEHPCLFRVHEGPTPEKLENLNTYLKLVGLALGGGETPTAKDYAKLAEQIHGRPDAP
VLQTMLLRSMQQALYSPDNIGHFGLAYDAYTHFTSPIRRYPDLLVHRSIKAVLAGRHYKA
GKWSQLGEHCSMTERRADDASRDVESWLKTYYMRDKIGEVFTGEISAVTSFGVFVLLDGI
YVEGLLHISELGKDYFHYRKDIQAIIGEKSGARYQLGSRLTVKVVRADLESSRIDFVLVP
EFEAAAETKPVAKKKRKVS
NT seq 2220 nt   +upstreamnt  +downstreamnt
atgccttcgaaacaaaaaaaacagaaaaatgcttccctgcgtttgcaggatccccatctt
gagcgggaaaaactcaagtatgacaatcccttgccgagccgggagttcgtcattcagctg
ctcaccgaacagggtgtgcctctatggcaggacgagctcgcccagatgctcgacatcaaa
aaggatgagtttcgctacttcgaacgtcgcctgcaggccatggagcgttccggtgagatc
atcatcaatcgcaagggcgccatctgcgttgccgagaaactggaactgatcaagtgcaag
gtatccggccatcgcgacggttacggcttcgccattcctgaagaagccggcgtcgaagac
gtctttctgtccgagcgcgaaatgcacaaggtactgcatggcgaccgggtcatggtcagc
atcaccggtaccgacaagcgtggtcgtaacgaaggccgcatcgtcgaagtgctggagcgg
gcggtccagaagctggtcgggcgcatctacctgtcgcgcggtgtgtggctggtggtggcg
gaagacaagcgcatcaatcaggacatcctcatcgaaccgggtggcgaaggcggcgcgcag
cacggccaggtggtgatcgtcgaaatttcatcgcaaccggacagctaccgtcagcccatc
ggccgggtggtggacatcctcggcaactacgccgaccccggcatggaaatcgagatcgcg
ctgcgtcagcacgatctgcctcacgtcttctcggatgccgcggtcgagcaggcccaggaa
acgccgaagaaggttcgcaagagcgatcacaagggtcgggaagacctgcgcgagctgccg
ctggtcactatcgacagcgaaaccgcgcgcgacttcgacgacgccgtcttcgccgagcgg
gtcgacaacggctatcgtctggtggtggcgatcgccgacgtcagccattacgtcaagccg
ggggacgcgctggatcaagatgccgtagagcgagggacctcggtctatttcccgcgccgc
gtcattccgatgctgccggaagccctctctaatggtatctgttcgctcaaccccgacgtc
gagcgtctttgcatggtctgcgacatgcagatcagcaccaaaggcgaggtcaaacaatat
cgtttctacccggcggtgatgcagtccaaggcgcgtctcacctataacgccgtgtgggat
tggttgcagcatggctccgatcacccgatgttgcccaacctgcaaaccctgtacagcctc
ttcaaagtgctgctggcagcgagggaagagcgcggcgccatcgagttcgacagcaccgaa
acccagatggtgttcaatgagagcggcaagatcgacaagatcgtaccggtggtgcgcaac
gacgcccatcgcctgatcgaagagtgcatgctcgctgccaacgtctgcgcggccgatttc
ctgctcaagcacgagcacccctgcctgttccgcgtgcacgaagggccgacgccggaaaaa
ctggaaaacctcaacacctatctcaagctggtggggctggcgttgggcgggggcgaaacc
ccgaccgccaaggattacgccaagttggccgaacagatccacggccgcccggatgccccg
gtattgcagaccatgctgctgcgctccatgcagcaggcgctctacagtccggacaatatc
ggtcacttcggtctggcctatgacgcctatacccacttcacctcgccgatccgccgctat
cccgatctgctggtgcatcgctccatcaaggcggtgctagccggacgtcactacaaggcg
ggtaaatggtcgcaactgggtgagcactgttccatgaccgaacgtcgtgccgacgatgcc
agtcgcgacgtggagtcctggctcaagacctactacatgcgcgacaagatcggtgaggtg
ttcaccggggaaatcagtgcggtcaccagctttggcgtatttgtgttgctcgacgggatc
tatgtagagggcctgctgcacatctccgaactcggcaaggactatttccactaccgcaag
gacatccaggccatcattggcgagaagagcggggctcgctaccagttgggcagccgcttg
accgtcaaggtggtgcgcgccgacctggaaagcagccgcatcgatttcgtgctggtgccg
gagttcgaagcagctgccgagaccaagccggtggcaaagaaaaagcgcaaggtcagctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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