KEGG T05921: DM292

Stutzerimonas frequens: DM292_08280

Entry

DM292_08280       CDS       T05921

Name

(GenBank) DNA topoisomerase IB

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

psed Stutzerimonas frequens

Brite

KEGG Orthology (KO) [BR:psed00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psed03032]
    DM292_08280
   03400 DNA repair and recombination proteins [BR:psed03400]
    DM292_08280
Enzymes [BR:psed01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     DM292_08280
DNA replication proteins [BR:psed03032]
Prokaryotic type
  DNA Topoisomerases
   DM292_08280
DNA repair and recombination proteins [BR:psed03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      DM292_08280

SSDB

Motif

Pfam:

Topoisom_I Top1B_N_bact

Other DBs

NCBI-ProteinID:

AWT10191

Position

complement(1785747..1786847)

AA seq 366 aa
MRDDSTMQEPPPLAEGDRPVPRDEAGDTGTLLCPALPPDLHYVDDSQPGIRRRTLRGKFA
YFDTDGERIRDEDEIRRINKLAIPPAYRDVWICPDPQGHLQATGRDARGRKQYRYHPRWR
EIRDSNKYDRMLEFGEALPRLRRDLEKHLALRGMPREKVMALVVLLLESTLIRIGNPRYA
KDNRSYGLTTLRTRHVDIRGTAIRFHFRGKSGVKHEVTLRDKRLARLMRRCMELPGQQLF
QYLDDEGQRRAVSSSDVNAYLQEMTGRDFTAKDYRTWAGSALALARLRQLECSPESMARH
NLVETVRQVASQLGNTPAVCRQCYIHPAILQAFSEGALAGLRGARKRRWLSAEEVGLLAF
LRSAAD

NT seq 1101 nt +upstreamnt +downstreamnt
atgcgcgacgacagcaccatgcaagagccccctcccctggcggagggagatcgccccgtt
cccagggacgaagcgggcgacactggcaccctcttatgccctgcgttaccaccggacctg
cactacgtagatgattcgcaacccggcatccgccgccggacgttacgtgggaagttcgcc
tacttcgatactgacggtgagcgcatccgcgacgaagacgagatacgcaggatcaacaag
ttggcgataccgcctgcgtaccgtgatgtctggatctgccccgatccgcaaggtcatctt
caagctaccggtcgcgacgcccgtgggcgcaagcagtaccgttaccacccccggtggcga
gagatccgagacagcaacaagtacgaccggatgctggagttcggcgaagcactgccacgg
ctgcgccgagacctggaaaagcacctggcgctccggggcatgccgcgcgagaaggtcatg
gcgttggtggtgctattgctcgaatccacactaatccgaatcggtaatccacgttacgcc
aaggacaaccgctcctacgggctgactaccctgcgtacccgccatgttgatatccgcggc
accgcaatccgtttccactttcgcggcaaaagcggggtcaagcacgaggtcaccctgcgc
gacaagcgcctggccaggcttatgcgccgctgcatggagctaccgggccagcagctgttt
cagtatctggatgacgaggggcaacgccgggcggtcagctccagcgatgtgaatgcctac
ctgcaggaaatgacgggccgcgacttcaccgccaaggactaccgcacctgggccggaagt
gccttggcactggcgcgtctgcgtcagctcgaatgctcccccgagagcatggcccggcac
aatctggttgagacggtaaggcaggtcgccagccagctggggaacacgcccgccgtatgt
cgacagtgctacatccatcctgcaatcctgcaggcattcagcgagggagcactggccgga
ttgcgaggtgccaggaagcgcagatggctgagcgcggaagaggttggattgctagccttt
ctcaggagcgcagcggattga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

Download RDF

DBGET integrated database retrieval system