KEGG   Paraflavitalea soli: D3H65_02285
Entry
D3H65_02285       CDS       T05640                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pseg  Paraflavitalea soli
Pathway
pseg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pseg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    D3H65_02285 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pseg03400]
    D3H65_02285 (ligD)
Enzymes [BR:pseg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     D3H65_02285 (ligD)
DNA repair and recombination proteins [BR:pseg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     D3H65_02285 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S DNA_ligase_OB_2 mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AXY72868
UniProt: A0A3B7MEU9
Position
complement(609586..612273)
AA seq 895 aa
MALTTYRKKRSFNKTPEPTGGKSSGKALRFVIQKHDASRLHYDFRLEMDGVLKSWAVPKG
PSTNPEDKRLAMMVEDHPYDYRSFEGIIPEGNYGAGTVIVWDEGTYEPLEPSGDKKKDEK
ALLKQLKAGSLKFSLSGHKLQGEFALVRLKNAENNAWLLIKHRDQYAKATDVTRKVRSVV
SDKTLEEVAKTSHNIYGQSKAAAPKKASKAATTTPKKAVKKTAPRKAARKKKDVAALEEA
PKKAFPKNIQPMLGTLVSEPFDQPGWLYEIKWDGYRALALCNKGKVELLSRNQKSFNEKF
YPVYKAVKDWQLDAVIDGEICVVSDKGISHFGSLQNWRSEADGELVYYVFDILWLDGHDL
TGLPLVKRRDLLRPLVPSSGIIRYSEAFESSATEFLAAASKMGMEGIMAKKADSVYLPGE
RTRDWLKLKANKRHEVVIGGFTNNEDSPKLFSALLVGLYDGKRLNYTGKIGTGFNDKMQR
EMMKQFKPLITTKCPFTELPDVNKPSRFRPNPPHATVTWLKPKLVGEVSYAEMTSDGVMR
HPSFEGMREDKKASAVVAETAVEVKEVTKRGRKDPATKLLKQGGKQERKTLLNPSEATQV
RAINGHELSFTNLNKIFWPKEKYTKRDMLNYYYQVAPYILPYLVNRPQSLNRYPNGINGK
SFYQKDITGKAPAWIKQFPYHTSEGEDKNFMVPTNEAGLLWMANLGAIEMNPWNSTIDKP
EHPDWCCLDLDPDKGNTFEQVIQTARVVKQVLDQLGIEGYPKTSGSTGIHIYIPLGAKYT
YDECQLFGKLIATHVREQLPQFTSIERLTRNRKGKLYIDYLQNRPKATLAAAYSLRPKPG
ATVSMPLHWDEVKKGLQLQHFTLANAMERIKREGDLFKPVLGKGVNIARVLKQLQ
NT seq 2688 nt   +upstreamnt  +downstreamnt
atggctttaactacctaccgcaaaaaacgctcctttaacaaaacaccggaacctaccggt
ggcaagtcatccggcaaagctttacgatttgtaatacaaaagcatgatgcatcccgcctg
cattatgatttccgcctggagatggacggtgtattgaaaagttgggcggtccccaagggg
ccttccaccaatcccgaagacaaaagactggccatgatggtagaagaccatccctatgat
taccgcagttttgagggcattatccccgaaggtaattatggggccggcacggtgatcgta
tgggatgaaggcacctatgaacccctcgaacccagcggcgataaaaagaaagatgaaaaa
gcgttgctcaaacaactcaaagcaggctcgctcaaattcagtttatcaggccataaacta
cagggtgaatttgcgctcgtacgattaaaaaatgcagagaacaacgcctggctactcatc
aaacaccgggatcagtacgccaaagcaacggatgtaaccaggaaagtacggtctgttgta
tctgataaaacccttgaagaagtggcaaagaccagtcataatatatacggtcaatcaaag
gctgccgctcctaaaaaagcttccaaagccgctaccaccacaccgaaaaaagcagtaaaa
aagacagcaccgcgcaaggcggcacgaaaaaaaaaagacgtagcagcactggaggaagca
cctaaaaaagcatttcccaaaaacattcaacccatgctgggcaccctcgtcagcgaacct
tttgatcaaccaggctggttgtatgagatcaaatgggatggctaccgggccctggccctt
tgtaataaaggcaaggtggaactactctcccgcaaccagaaatcattcaatgaaaaattc
tatcctgtatacaaggcggtaaaggactggcagctcgatgcagtcatagacggagagatc
tgcgtggtcagtgacaaaggcatttcccattttgggtcgctgcagaactggcgaagtgaa
gctgatggcgaactggtatattatgtatttgacatcctttggctggatggccacgacctc
accggactgccactggtaaagcgacgtgatctgctacgaccattggtaccatcttcgggc
attatccgctacagcgaagccttcgaaagctcggccacagagttcctggcagcagcttct
aaaatgggaatggaaggcataatggccaagaaagccgatagtgtttacctgccgggagaa
cgtacccgcgactggttaaagctgaaagccaataaaagacatgaagtagtgatcggcgga
ttcaccaacaatgaggattcacccaaactgttcagtgcattgctggtagggctgtatgac
gggaaaagattgaactataccggcaaaataggtactggtttcaatgacaagatgcaacgg
gaaatgatgaaacagtttaagccccttattaccaccaaatgcccttttactgaactgcca
gacgtcaacaagccttcccgcttccggcccaatcctcctcatgccaccgttacctggcta
aaacccaaactggtgggagaagtgagttatgctgaaatgaccagcgacggagtgatgcgc
catcccagttttgaaggtatgcgggaagacaaaaaagccagcgctgtagtagctgaaact
gctgtggaggtaaaggaagtgactaaaaggggcaggaaagatccggcaaccaaactattg
aagcagggaggcaaacaggaaaggaagaccctgctgaacccttctgaagcaacgcaggtg
agggctatcaatggccatgaactttcctttaccaacctcaataagatattctggccaaag
gaaaaatataccaagcgagatatgctcaactactattaccaggtggcgccctatatactc
ccctacctggtaaaccggccccaatcattgaaccgataccccaatgggatcaatggaaaa
agcttttaccagaaggatataacaggcaaagcgcccgcatggatcaagcaatttccctat
cataccagtgagggggaagacaagaatttcatggtacctaccaatgaagcaggcctgttg
tggatggctaacctgggggccattgagatgaacccctggaacagcaccattgacaaaccg
gagcaccctgactggtgctgcctcgacctggaccccgacaaaggcaatacttttgaacag
gtgatacaaaccgcccgggtggtaaaacaggtgctggaccaactgggcattgaggggtac
cccaagacatccggctctaccggtattcatatctatatcccattgggcgcaaagtatacg
tatgacgaatgccagctatttggcaagctcatcgccacgcatgtacgggagcaattacca
cagtttaccagcatcgaaagactcacccgcaacaggaagggaaaactctatatcgactac
ctgcaaaatcgccccaaagccacgctggcagcggcttactcactgcgacccaaacccggc
gccacggtatcaatgcccctccattgggacgaagtaaagaagggtttacagctacaacat
ttcacacttgccaatgcaatggaacggatcaaaagagagggcgatctgttcaaaccagtg
ttgggtaaaggtgtcaatattgccagggtattgaagcaattacaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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