KEGG   Paraflavitalea soli: D3H65_13720
Entry
D3H65_13720       CDS       T05640                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pseg  Paraflavitalea soli
Pathway
pseg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pseg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D3H65_13720 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pseg03019]
    D3H65_13720 (rnr)
   03016 Transfer RNA biogenesis [BR:pseg03016]
    D3H65_13720 (rnr)
Enzymes [BR:pseg01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     D3H65_13720 (rnr)
Messenger RNA biogenesis [BR:pseg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     D3H65_13720 (rnr)
Transfer RNA biogenesis [BR:pseg03016]
 Prokaryotic type
  tRNA degradation factors
   D3H65_13720 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3
Other DBs
NCBI-ProteinID: AXY74978
UniProt: A0A3B7MLA2
Position
complement(3751731..3753794)
AA seq 687 aa
MSKKQSKKSKNKPKKKKGFTDQDSLKGVLDITRSGVGYVVIPNNAGDILVRPGDFNTALH
GDTVRVRVVNTGGRQSSRQQGKIVEVVQRKQTQFMGRIEVGKTFAFFIADVDKPMPDIFV
PLTSLHEAKDKDRVIVRIVEWQPNKKPVGEVVQVMQPGDDNDIAMKEILMQNGFPLAFSD
DVLEETARIPDIIPQAEIKNRKDVRETLTFTIDPVDAKDFDDAISFRILKNGNYEIGVHI
ADVSHYVEPDTALDKEAYERATSVYLPDRVLPMLPERISNELCSLRPKEDKLTFSAIFQI
TDKGDVKQHWLGKTIIHSDHRFTYEQVQEIIEKEEGLYKDEVLILNTLAQKFRKARFRKG
AINFSSQEVRFKLDEKGKPIGIMIKESKEAHQLVEEFMLLANRTVAESVARIKFNKKEIP
FPYRVHDTPDEKKLEPFAAFARKYGHEFDTKSPEGIARSFNQMLKDVQGKPEQHVLEQLG
IRTMAKAIYTAENIGHYGLGFKQYCHFTSPIRRYPDVMVHRVLFDILNEKIEPDKKMEQK
CKHCSEKERSAMESERAANKYKQVEYIQNFLGDEFEGVISGVAAFGFWVETIEHKCEGLV
SINSLLEYDDFRLIEGDYSLAGMRSGRKFRMGDKVRIKVIAANLTKRQLDYEWVITATAG
DDKVEAGLQKPSYPIPKRGKGGKRKKS
NT seq 2064 nt   +upstreamnt  +downstreamnt
atgagtaagaaacaatcaaagaagagtaagaacaagcctaagaagaaaaaagggtttact
gatcaggattccctgaaaggggtattggatatcacccgttccggagtaggatacgtggtc
atacccaacaatgccggtgatatactggtgcgccccggcgattttaatacagccctccat
ggcgataccgtgcgtgtaagagtggtcaataccggtggccggcaaagcagccgtcagcag
ggcaagatcgtggaagtagtacagcgtaagcaaacccagttcatgggcaggatagaagtg
ggaaagacctttgcgtttttcattgctgatgtagacaagcccatgcccgatatatttgtg
cccctcaccagcctccacgaggcgaaagacaaggaccgggtgatcgtacggattgtggaa
tggcagcccaacaaaaagcctgtaggcgaagtggtgcaggtgatgcagccaggcgatgac
aatgacattgccatgaaggagatcctcatgcagaacgggtttcccttggccttttccgat
gatgtactggaagaaacagcccgtatacccgatatcattccccaggcggagatcaagaac
cgcaaggatgtgcgggaaacactcaccttcaccatcgatcccgtagatgccaaggatttt
gacgatgctatctccttccgcatactcaagaatggtaactatgagatcggcgtgcacatt
gccgatgtaagccattacgtagaaccggataccgcactggacaaggaagcctacgaaaga
gctacctccgtgtacctgccagacagggtactgcccatgctgcccgaaaggatatccaac
gaattgtgctccctgcgtcccaaagaagacaagctcaccttttcagccatcttccagatc
accgacaaaggcgatgtaaaacaacactggctgggcaaaacgatcattcactccgatcat
cgctttacctacgagcaggtgcaggagatcattgagaaagaagaaggtttgtacaaagat
gaagtacttattctcaataccctggcgcagaagtttcgcaaagcacggttcaggaaaggc
gctattaatttctcttcccaggaagtgcgtttcaaactggatgagaaagggaagcccatt
ggcatcatgatcaaagaaagcaaagaggcccatcaattggtggaggaattcatgctgctg
gccaaccgaaccgttgcagagagcgttgccaggatcaagttcaataaaaaagagattccc
ttcccataccgggtgcacgatactcccgatgaaaagaagctggagccctttgccgctttt
gcccgtaaatacggccacgagtttgataccaaatcacccgaaggcattgccaggtctttc
aaccagatgctgaaagatgtacagggcaagccggagcagcatgtgttggaacaactgggc
atccgcaccatggccaaagctatctatacagcagaaaatatcggtcactatggcctgggc
tttaaacaatactgccacttcacttcacccatacgccggtaccccgacgtaatggtgcac
cgtgtgttgtttgatatcctcaatgaaaagattgagcccgataagaagatggagcagaaa
tgcaaacactgcagcgaaaaagaacgcagtgccatggaatctgaaagggcagccaataaa
tacaagcaggtagagtacattcagaatttcctgggcgatgagtttgaaggcgtcatcagt
ggcgtagctgcctttggattctgggtagagaccatcgaacacaaatgcgaagggctggta
agcatcaacagcctgctggaatacgatgatttccgtcttatagaaggcgattacagcctg
gctggtatgcgcagtggccgtaagttcaggatgggcgataaagtgcggatcaaagtgatc
gcagccaacctcaccaaacgccagctggattacgagtgggtgatcaccgccaccgccggt
gatgataaagtagaggcgggtctgcaaaagccatcctatccgatacccaaaaggggcaag
ggcggcaaacgcaaaaaatcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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