KEGG   Pseudodesulfovibrio cashew: GM415_00585
Entry
GM415_00585       CDS       T06353                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
psel  Pseudodesulfovibrio cashew
Pathway
psel03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psel00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GM415_00585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psel03019]
    GM415_00585
   03009 Ribosome biogenesis [BR:psel03009]
    GM415_00585
Messenger RNA biogenesis [BR:psel03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     GM415_00585
Ribosome biogenesis [BR:psel03009]
 Prokaryotic type
  rRNA helicases
   GM415_00585
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 AAA_22
Other DBs
NCBI-ProteinID: QGY38696
UniProt: A0A6I6J7B7
Position
complement(133448..135184)
AA seq 578 aa
MEENNTPEAVQEETAPDSSTPTMTFEELPDALRAACERAGWDRLMPVQEKALPFVMNDKD
VMVQARTGSGKTGAFVLPLLHKLDPSKAECQALVMVPTRELAQQVAQEARMLAGDDGINV
VAVYGGVGYKAQLDAFREGAQLVVGTPGRILDHLVRRSLSLDSLKVIIFDEADRMLSVGF
YPDMIEVKRYLPRRLEGSYMFSATFPQSVLRLAEEFMVKPEFLSLSSDETNVSAIAHQFV
EVQAMGKERKLLKLIELENPASAIIFCNTKRNVEFIAAVLSQFGFDAEGLTSDLTQNKRE
QLMARIKEGKLRFLVATDVAARGIDIPELSHVFMMEPPEDPESYVHRAGRTGRAGATGTA
ITLVDVIQKMELERIATRFKITFEEIKDPTEEDVAAIIEERLTALLEKKFRKLTPLQRER
ASRFLPLVEKYASDADSMGLIAMLLDELYQYTLHGKPAEPVSTGQPKRDRADREQPREDK
PKKSRPRKRKPRNGGGQQDSEGGSRDRSPRNRQDSPAEERAEPRRERREAPKEPRREKSE
APKEPRREPATRSEAESGESGGEAKPRPRRRRPRRRRR
NT seq 1737 nt   +upstreamnt  +downstreamnt
atggaagaaaacaacactcccgaagccgtacaggaagagacggcccctgattccagcacc
ccgacaatgacattcgaagaattgcccgatgccctgcgggccgcttgcgagcgggccgga
tgggaccggctcatgcccgttcaggagaaggcgctgcctttcgtcatgaacgacaaggac
gtcatggtccaggcccggaccggttccggcaagaccggcgctttcgtgctgccgctgctg
cacaagctcgacccgtccaaggcagagtgccaggctctggtcatggtccccacccgcgaa
ctggcccagcaggtcgcccaggaggcgcgcatgctggccggcgacgacggcatcaacgtg
gtcgccgtgtacggcggcgtgggctacaaggcccagctcgacgccttccgcgagggcgcg
cagctggtggtcggaactcccggccgcattctggaccacctggtccggcgcagcctgagc
ctggacagcctcaaggtcatcattttcgacgaggctgaccgaatgctgtccgtggggttc
tacccggacatgatcgaggtcaagcggtatctcccgcgccgcctggaaggcagctacatg
ttctcggccacattcccgcagtcggtcctccgactggccgaggagttcatggtcaagccg
gagttcctgagcctttccagcgacgagaccaatgtctcggctatcgcccaccagtttgtc
gaggtccaggccatgggcaaggagcgcaagctcctcaagctcatcgaactggagaatccc
gcttcggccatcattttttgcaataccaagcgcaatgtggagttcatcgccgcggtcctc
tcccagttcggtttcgacgccgaggggttgacctcggacctgacccagaacaagcgcgaa
cagctcatggcccgcatcaaggaaggcaagctgcgtttcctggtggccacggatgtggcc
gcgcgcggcatcgacatcccggaactctcccatgtcttcatgatggagccgccggaagac
ccggagtcctacgttcaccgggcgggccgcacgggtcgcgccggagccacgggcacggcc
atcaccctggtcgacgtcatccagaagatggagctggagcgtatcgccacgcggttcaag
atcaccttcgaggagatcaaggaccccaccgaagaggacgtggcggccatcattgaggag
cgtctcaccgcattgctggaaaagaaattccgcaagctcaccccgctgcagcgggagcgg
gcgtcccgcttcctgccgctggtggagaagtacgcctcggacgcggattccatgggactc
attgccatgctcctggacgagctttaccagtacaccctgcacggcaagcccgccgagcca
gtatccaccggtcagcctaaacgtgatcgagccgatcgggagcaaccccgtgaggacaag
ccgaagaagagccgcccgcggaagcgcaagcccaggaacggtggcggtcagcaggattcg
gaaggcggcagcagggatcgttcgcccaggaatcggcaggactcgcccgccgaggagaga
gccgagccccggcgcgaacgacgcgaagcgcccaaggaaccccgtcgtgaaaagagcgaa
gcccccaaggagcctcgccgcgagcccgcaacccgcagtgaagccgagtccggtgagagc
ggaggcgaggccaagccccgcccgcgtcgccgtcgtcccaggcgcagaaggcgttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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