KEGG   Pseudodesulfovibrio cashew: GM415_11670
Entry
GM415_11670       CDS       T06353                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
psel  Pseudodesulfovibrio cashew
Pathway
psel03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GM415_11670 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psel03021]
    GM415_11670 (rpoC)
   03400 DNA repair and recombination proteins [BR:psel03400]
    GM415_11670 (rpoC)
Enzymes [BR:psel01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GM415_11670 (rpoC)
Transcription machinery [BR:psel03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GM415_11670 (rpoC)
DNA repair and recombination proteins [BR:psel03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GM415_11670 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: QGY40752
UniProt: A0A6I6JKB0
Position
2595499..2599647
AA seq 1382 aa
MTLDDLFTLRGAPNQTAQGRNLKAIQISIASPETIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDITMADLEKVLYFDSFIVLDPGETPLKTHQVVSEDQYFQVIDHFGED
ALKVGMGAETVRTMLEALDLPTLRTELREESQTTRSQTKKKKITKRLKIVEAFLESGNKP
EWMIMEVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYAELEKRELATTIKSAKKMVEREDLVVWDILED
VVREYPIMLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
EAQIECRVLMMSTNNILSPSNGSPIINPSQDIVLGLYYLTTPRSFELGEGMCFSDREEVI
AAYDHGVLGLHARIKVRIDGKLEETTTGRVIVSELIPDEVPFEMVNCVLNKKNIAALVSG
SYRTAGTKATVILCDKIKDLGYEYGARAGVTIGVKDLKIPDAKAGMLETAHAEVDEIENQ
FQDGIITRTEKYNKVVDVWTKVTNDISNEMMQEMSTDVLTDPKTGKTEVNSSFNPIYMMA
TSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITASFREGLSVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVVQDVTVSEIDCGTVDGLELTHLIKGGEIKQRLHERVLGRVTMF
DVYNEDTGELIIPGNTIIDSAYAKKLDASGVNSITIRSGLTCKAKQGVCAMCYGRDLARG
HLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTASKEIESSSIEAQHNGRVVTSRMRTV
VNSEGHKMVLGKSCQVGIVDDQGREREKYVLPSGARLLVDDGQDVKKGSPLAEWDPYMEP
FIVDVSGAIKFKDIIEGKTVQEDRTSKASVTIMEYRTTNYRPAVGILDEDGKAVQRPGTD
IDANFAMPVGAILMVKDGDQVKAGDVIARKPRESSKTKDIVGGLPRVAELFEVRKPKDLG
VVSSIDGIVTFGPETKGKRKVVVTPEVGDSKEFLIPKGKHITVQESDFVEAGDLLTEGSP
ELHDILRIKGEKYLARYLVEEIQDVYRFQGVNINDKHIEIIVRQMLKKVSILEPGSTSFL
IGEQVDKQRFMEENAKVMEEGGKPAVAETLVLGITQASLSTDSFISAASFQETTKVLTEA
SLKGKSDQLRGLKENVIVGRLVPAGTGFRKYIDTDIVVPDQPERPDKFLEELEENPLLVE
TE
NT seq 4149 nt   +upstreamnt  +downstreamnt
atgacgttggacgatctgttcaccttgcgtggagcgccgaatcagacggcccagggccgc
aacctgaaggctatccagatatccatcgcctcgcccgagaccattcgcgaatggtcctac
ggcgaagtgaagaaacccgagaccatcaactaccggaccttcaagcccgagcgcgacggc
cttttttgcgccaagatcttcgggcccgtgaaggactacgagtgcaactgcggcaagtac
aagcgcatgaagcatcgcggcatcgtctgcgagaagtgcggcgtcgaggtcatcgcctcc
aaggttcgccgcgagcgcatgggccacatcgaattggccgcgcccgttgcccacatctgg
ttcctcaagactctgccttccaagatcggcacgctgctcgacataaccatggccgacctg
gagaaggtgctgtacttcgattccttcatcgtgcttgatccgggcgagaccccgctcaag
acgcatcaggtagtgtccgaagaccagtacttccaggtcatcgaccacttcggcgaagac
gccttgaaggtcggcatgggcgccgagacggtccgcaccatgctggaagccctggatctg
ccgaccctgcgtaccgaactgcgtgaggagtcccagactacccggtctcagaccaagaaa
aagaaaatcaccaagcggctgaaaatcgtcgaggctttcctcgagtccggcaacaagccc
gagtggatgatcatggaagtgattcccatcattccgcccgagctgcgtcctctcgtcccc
ctggacggcggccgtttcgccacctccgacctcaacgatctctaccgtcgcgtcatcaac
cgcaacaaccgcctgaagaggctgttggagctgggtgcgcccgagatcatcatccgcaac
gaaaagcgcatgctccaggaagccgttgacgccctgttcgacaacggtcgccgtggccgc
gccatcaccggcaccaacggtcgcccgctcaagtcgctgtccgacatgatcaagggcaag
cagggccgtttccgccagaacctgctcggcaagcgtgtcgactactccggccgttcggtc
atcgtggtcggtccgaagctgaagctgcatcagtgcggcctgcccaagaagatggccctc
gagctcttcaagccgttcatctacgccgagctggaaaagcgcgaactggccaccaccatc
aagtccgccaagaaaatggtcgagcgcgaagacctggtcgtctgggatatcctggaagac
gtggtccgcgaatacccgatcatgctcaaccgtgcaccgaccctccaccgcctgggcatc
caggcctttgagccgctgctcgtggaaggcaaggccattcagcttcacccgctggtttgc
tccgcctacaacgcggacttcgacggtgaccagatggccgtgcacgtgcccctgtcggtg
gaggcgcagatcgaatgccgcgtgctcatgatgtccaccaacaacatcctgagcccctcc
aacggttcgcccatcatcaacccctcgcaggacatcgtcctcggtctgtactacctgacc
acgccccgttccttcgaactgggcgagggcatgtgcttctccgaccgcgaggaggtcatc
gccgcctacgatcacggcgttctgggcctgcacgcacgcatcaaggttcgcatcgacggc
aagctggaggagaccaccaccggccgcgtcatcgttagcgagcttatcccggacgaagtg
ccgttcgagatggtcaactgcgtgctcaacaagaagaatatcgcagccctggtctccggt
tcctaccgcacggcaggcaccaaggccacggtcatcctgtgcgacaagatcaaggacctt
ggttacgaatacggcgctcgcgccggcgtgaccatcggcgtcaaggacctcaagattccc
gacgccaaggccggtatgcttgaaaccgcccacgccgaagtggacgagatcgagaaccag
ttccaggatggtatcattacccggaccgagaaatacaacaaggttgtcgacgtctggacc
aaggttaccaacgacatctccaacgagatgatgcaggaaatgtccaccgacgtgctgacc
gatcccaagaccggcaagaccgaggtgaactccagcttcaaccccatctacatgatggcc
acctcgggtgctcgaggcaaccaggaccagatgcgtcagttggccggtatgcgcggtctg
atggccaagccttcgggcgagatcatcgagacgcccatcaccgcctccttccgcgaaggt
ctgtcggttctccagtacttcatctccactcacggcgctcgtaagggtctcgcggatacc
gcgctcaagaccgccaactccggttaccttacccgccgcctggtcgatgtcgttcaggac
gtgaccgtctccgagatcgactgcggcaccgttgacggcctggagctgacccacctgatc
aagggtggtgaaatcaagcagcggctgcacgaacgcgtgctcggccgcgtgaccatgttc
gatgtctataatgaagacaccggcgaattgattattcccggcaacacgatcatcgattcg
gcgtacgccaagaagctcgacgcttccggcgttaactccatcaccattcgttccggcctg
acctgcaaggccaagcagggcgtttgcgccatgtgttacggccgtgacctggcccgaggt
catctggtcaacgtcggtgagaccgtcggcattatcgccgcccagtccatcggcgagccc
ggaacccagctgaccatgcgtaccttccacattggtggtaccgcatccaaggaaatcgag
tcctcatccatcgaagcccagcacaacggccgggtcgtcacttcgcgcatgcgtaccgtc
gtcaactccgaagggcacaagatggtgctcggcaagagctgtcaggtcggcatcgtggac
gatcagggccgcgagcgggaaaaatacgtgctgccttcgggtgcacgcctgctggtggac
gacggacaggacgtcaagaagggctccccgctggccgagtgggatccgtacatggaaccc
ttcatcgtcgacgtttccggcgccatcaagttcaaggacatcatcgaaggcaagaccgtg
caggaggatcgcacctccaaggcgtccgtcaccatcatggagtatcgcaccaccaactac
cggcccgcggtcggcattctggacgaggacggcaaggccgtgcagcgtcccggtaccgac
atcgacgccaacttcgccatgccggtgggcgccattctgatggtcaaggacggcgatcag
gtcaaggcgggtgacgtcatcgcgcgtaagccgcgtgagtcctccaagaccaaggacatc
gtcggtggtctgcctcgcgtcgccgagctgttcgaggtgcgcaagcccaaggatctgggt
gttgtctcctccattgacggcattgtcaccttcggtcccgaaaccaagggcaagcgcaag
gtcgtggtcactcccgaggtgggcgactccaaggaattcctcattcccaagggcaagcac
atcacggttcaggagtccgacttcgtggaagcgggcgatctgctgaccgaaggctctccg
gagctgcacgacatcctgcgcatcaagggcgagaagtacctggcccgctacctggtcgag
gaaatccaggacgtgtaccgcttccagggcgttaatatcaacgacaagcacatcgaaatc
atcgtccgccagatgctgaagaaggtttcgatcctggagcccggttccacctccttcctc
atcggcgagcaggtggacaagcagcggttcatggaagagaacgccaaggtcatggaagag
ggcggcaagcccgctgtcgcagagaccctggttctgggtatcacccaggcatctctgtcc
acggactccttcatctccgcagcctccttccaggagaccaccaaggtgctgaccgaggct
tcgctcaagggcaagtccgaccagctgcgcggcctgaaggagaacgtcattgtcggccgt
ctcgtgcctgcaggaaccggtttccgcaagtacatcgacaccgacatcgtggtcccggat
cagcccgagcggcccgacaagttccttgaggagcttgaggagaatccgcttctggtcgag
acggagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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