KEGG   Pseudomonas sp. MRSN12121: TO66_28175
Entry
TO66_28175        CDS       T03702                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
psem  Pseudomonas sp. MRSN12121
Pathway
psem03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psem00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TO66_28175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psem03021]
    TO66_28175
   03400 DNA repair and recombination proteins [BR:psem03400]
    TO66_28175
Enzymes [BR:psem01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TO66_28175
Transcription machinery [BR:psem03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TO66_28175
DNA repair and recombination proteins [BR:psem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TO66_28175
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 ApbA_C
Other DBs
NCBI-ProteinID: AJO80959
UniProt: A0A0C5E8E3
Position
complement(6178191..6182390)
AA seq 1399 aa
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRITETVNDRDGGSVTNTRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDRNGDEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDVKDRPAAGKDIRPAVKM
VGDDGKDLLLPGTDVPAQYFLPANALVGVADGARIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTHVLVENERLNTEDKFIAKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq 4200 nt   +upstreamnt  +downstreamnt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggactggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtcgcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaagtcgttg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgtgttctctat
ttcgagagctatgtcgttatcgatccgggcatgaccacccttgagaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggcgacgacttcgatgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggaacacgagattggccgt
ctgcgtgaagagattccgcaaaccaactcggaaaccaaaatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccactggtcccgctggatggcggtcgcttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgcctgctggatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagctgtcgacgcattgctcgacaacggtcgtcgtggtcgcgctatcaccggttcgaac
aagcgtcctctgaaatccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggcctgcctaagaaaatggctctcgagctgttcaaaccgttc
attttcggcaagctggaaatgcgtggcctggccaccaccatcaaagccgcgaagaagatg
gtcgagcgcgagctgcctgaggtttgggacgttctcgccgaagtgatccgcgaacaccca
gtgctcctcaaccgtgcaccgacccttcaccgtctgggcattcaggcgttcgaaccggta
ctgatcgaaggcaaggctatccagctgcaccctctggtctgtgccgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgaccctggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgcctgccaacggtgagccgatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggacctgcaggaagtcgaccgtgtgttccgtgctggc
gaagccgcactgcatgccaagatcaaggtgcggatcaccgaaaccgtcaacgatcgtgat
ggtggcagcgtgaccaacacccgtatcgtcgacactaccgttggtcgtgcgctgttgttc
caggttgtgccaaaaggcctgtccttcgatgtcgtcaacctgccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctatcgcgtggtgggtctgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcctactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtactgctaccgatgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtcgaaagcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtggtcgaccgcaatggcgacgaagtcgagcaggaatccttcaac
tcgatgtacatgatggccgactcgggggcgcggggttccgcagcacagattcgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgaaacgccgattact
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggttgtaaccgagatcgactgtggcaccgagcacggcctg
gtgatgactccgcacattgaaggcggtgacgttgtagagccgctgggtgaacgcgtgttg
ggtcgtgttatcgcccgtgacgtattcaagcctggtaccgaggacgtcatcgttcctgct
ggcaccctggtcgacgagaagtgggtcgaattcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccaatcagctgcgaaacccgctacggcatctgcgccaagtgctacggc
cgtgacctggctcgtggtcacctggtgaacattggtgaagctgtcggcgttatcgctgcc
cagtcgatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcgagccggacctccgcggccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctgaagcacgttgagcgagtggacggccacctggttgcagtgtcccgttccggt
gagctggcaatcgctgacgacttcggtcgtgagcgcgagcgctacaagctgccgtacggt
gccgtgatttcggttaaagagggtgacaaggtcgacgctggctccatcgtggccaagtgg
gacccgcacacccacccgatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagacagacgaattgaccggtatgaccaacattgaa
gtcctcgatgtcaaagatcgtccagctgccggtaaggacatccgtcctgccgtgaagatg
gtcggtgatgatggcaaggacctgctgctgccgggtaccgacgtaccggctcagtacttc
ctgccagccaacgccctggtcggtgttgcggacggtgcgcggatcgcgatcggtgatgtt
atcgctcgtattccgcaagaaacttcgaaaactcgcgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagctcgtcgtccgaaagaggcttcgattctggctgaggtcagc
gggaccatcgcgttcggtaaagagaccaagggcaagcgtcgcctggtcattaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggtgagcaggtaaaccgcggcgaagttatctccgacggcccaagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagacgatcctgcgtcagatg
ctgcgtaaagttgagatctccgagtccggtgattccagcttcatcaagggcgaccagatg
gaactgactcacgtactggtggagaacgagcgcctgaacacggaagacaagttcatcgcc
aagttcacccgtgttctgctgggtatcaccaaggcgtcgttgtcgaccgaatcgttcatc
tcggcggcctctttccaggagaccacccgcgtactgaccgaggcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagaaaacgtggtcgtgggtcgcctgatcccggctggt
accggcctggcgtatcacagcgagcgtaagcgtcgtcgtgatgccgacaagccgctgcgt
gtgagcgcaagtgaagttgaagctgcactgaccgaagcgctgaactccagcgggaactga

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