KEGG   Pseudoalteromonas piratica: OM33_12125
Entry
OM33_12125        CDS       T03513                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
pseo  Pseudoalteromonas piratica
Pathway
pseo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pseo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    OM33_12125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pseo03400]
    OM33_12125
DNA repair and recombination proteins [BR:pseo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     OM33_12125
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      OM33_12125
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_22 AAA_30 AAA Kinesin UB2H AAA_5 SLFN-g3_helicase DUF87 AAA_7 Microtub_bd
Other DBs
NCBI-ProteinID: AIY65808
UniProt: A0A0A7EGY6
Position
1:complement(2614603..2616618)
AA seq 671 aa
MSKDGVTDFKLVSPFKPSGDQPTAITQLVDGLEAGLAHQTLLGATGTGKTFTMANVIAEL
NRPTIILAHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVVASDTFIEKDASIN
DHIEQMRLSATKALLERKDVIIVASVSAIYGLGDPDSYLKMMLLIKQGDTVDQRDLLRRL
AELQYTRNDIDFQRGTYRVRGEVIDIFPAESETMAIRVEMFDDEVDRLSIFDPLTGAVER
HIIRATIYPKTHYVTPREKILAAIDNIKEELKIRRKQLLDNNRLVEEQRVAQRTQYDIEM
MSELGYCSGIENYSRYLSGRAPGEPPPTLLDYLPDEALMIIDESHVTVSQVGAMYRGDRS
RKENLVEYGFRLPSALDNRPLKFEEFEAISPQTIYVSATPGDYELERSNNEVAEQVIRPT
GLLDPELEIRPVATQVDDLLSEIYKRVELNERVLVTTLTKRMAEDLSDYLNDHDVKVRYL
HSDIDTVERVEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLI
QTIGRAARHINGRAILYADRITDSMKRAIDETERRRSIQHQYNIDNGITPQALNKKITDI
MDVGEQVDEKDTKQRKSPTAINKEILSADEINKKIKQLESDMLAFARDLEFEKAAKVRDE
IQQLHQELINA
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgagtaaagatggagtaactgattttaaattagtatcgccttttaaacccagtggtgat
caaccaactgctatcacacaattagtggatggtttagaagcgggccttgcccaccaaacc
ttgttgggcgcaacgggtacaggtaaaacctttaccatggctaatgttatcgcagagcta
aatcgcccaaccattattttggcacataacaaaacgcttgcagctcagctttatggtgaa
atgaaagagtttttcccagaaaatgcggtagagtactttgtatcttactacgattattac
caaccagaagcctatgtcgttgcaagcgatacctttatcgaaaaagatgcttcaataaac
gatcacatagagcaaatgcgtttatcagccaccaaggctttattggaacgcaaagacgtt
attattgttgcatcagtgtctgctatttatggtttaggcgatcctgattcttatttaaag
atgatgttgctaatcaaacagggcgatacggttgatcagcgagacttactgcgcaggctg
gcagagttgcaatacacacgcaatgatatcgactttcaacgcggtacgtatcgagtgcgt
ggtgaagtcattgatattttccctgctgaatctgaaaccatggcaattcgggttgaaatg
tttgacgatgaagtggataggctgagcatttttgatccgctcactggtgcggtggagagg
catattattcgcgccacgatttatcctaaaactcactatgttacgccgcgcgaaaagatt
ttagcggccattgacaatattaaagaagaactcaagatccgccgtaaacagctgcttgat
aataaccgtttagtcgaagaacaaagggttgcacagcgcacccaatacgatattgaaatg
atgagtgaattggggtactgctctggtatcgaaaactactcgcgttatttatctggtaga
gcacctggcgagccaccaccaacgttgcttgattatttacctgatgaagctttgatgata
attgatgaatcacacgttacagtatcgcaggtgggtgcgatgtatcgtggtgaccgcagc
cgaaaagaaaacttagttgaatatggttttcgtctgccatcagcgcttgataaccgtcca
ttgaagtttgaagaatttgaagcgatttcaccgcaaaccatttatgtgtcagcgacccca
ggggattacgaattagagcgctctaataacgaagtggcagagcaagtgattcgtccaaca
ggcttactcgatcctgagctcgaaattcgccctgtagccacgcaagttgatgatttgctc
tctgagatttacaaacgtgttgaacttaatgaacgcgtgttggttacaacgcttactaaa
cgcatggctgaagacttatctgattacttgaacgatcatgatgtcaaagtacgctatctg
cattcagatatagataccgttgaacgtgttgagattattcgtgacttacgtgccggtgtg
tttgatgtgttggtaggtattaaccttcttcgtgaaggcttagacatgccagaagtgtct
cttgttgctattttagatgccgacaaggaaggtttcttacgctcaacgcgatctcttatt
cagacgatagggcgtgccgcgcgtcatattaatggccgtgccattttatatgctgacaga
attacagattcaatgaaacgcgcgattgatgaaactgaacgtcgccgcagcattcagcat
cagtacaatattgataatggcattacgccacaggctctcaataagaaaatcactgatatt
atggatgtcggcgaacaagttgacgaaaaagacactaagcaacgtaagtcgcccacagcg
attaacaaagaaattttatctgcggatgaaattaataagaaaattaaacaactggaatct
gacatgttggcgtttgcgcgcgaccttgaatttgaaaaggcggcaaaagtacgtgatgag
atccagcaactacatcaagaactaattaatgcctaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (24)   

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