KEGG   Pseudonocardia sp. EC080610-09: AD006_25810
Entry
AD006_25810       CDS       T04146                                 
Name
(GenBank) polynucleotide phosphorylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
pseq  Pseudonocardia sp. EC080610-09
Pathway
pseq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pseq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AD006_25810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pseq03019]
    AD006_25810
   03016 Transfer RNA biogenesis [BR:pseq03016]
    AD006_25810
Enzymes [BR:pseq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     AD006_25810
Messenger RNA biogenesis [BR:pseq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AD006_25810
Transfer RNA biogenesis [BR:pseq03016]
 Prokaryotic type
  tRNA degradation factors
   AD006_25810
SSDB
Motif
Pfam: RNase_PH PNPase S1 KH_1 RNase_PH_C KH_2 PCB_OB KhpA-B_KH
Other DBs
NCBI-ProteinID: ALL77872
Position
complement(5607285..5609564)
AA seq 759 aa
MTDVISEDGVHESTAVIDNGAYGTRTVRFEAGRLARQAAGSVVAYLDDETMLLSATTASK
RPKDQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPGTDAILTCRLIDRPLRPSFVDGLR
NEIQVVVTVMSLDPKDPYDVVAINAASASTQLAGLPFSGPVGGVRVALIANETGTDTQWV
AFPTHDQLERAAFDMVVAGRVVGDDVAIMMVEAEATEKTIELVDGGANAPTEDVVADGLE
AAKPFIRSLCVAQQQLADVAAKPTADYPVFPAYQPDALEAVTEAVEQELAQALTIAGKQE
RETRTDEIKASVLEKLGERFTGRESELGNAFRALNKKLIRRRILTDQVRIDGRGLTDIRP
LSAEVEVIPRAHGSALFERGETQILGVTTLNMLRMEQTIDSLGPETSKRYLHHYNFPPFS
TGETGRVGSPKRREIGHGALAERALLPVLPDREEFPYAIRQVSEALGSNGSTSMGSVCAS
TMSLLNAGVPLKAPVAGIAMGLVSDEVDGQTRYVALTDILGAEDAFGDMDFKVAGTKDFV
TALQLDTKLDGIPSEVLAAALSQAKDARLTILEVIGEAIDGPDEMSKYAPRVTAVKVPVD
KIGEVIGPKGKMINSITEKTGADISIEDDGTIYVGANDGPSAEEAIGMINAIANPQLPKV
GERFLGTVVKAAAFGAFVSLVPGKDGLIHISKLGNGKRIGKVEDVCKVGDKIRVEVTDID
NRGKISLVPVQEGGENGEAPADAETGAEAPAEAEAANQS
NT seq 2280 nt   +upstreamnt  +downstreamnt
atgactgacgtcatcagcgaggacggcgtgcacgagagcaccgccgtcatcgacaacggt
gcctacggcacgcgcaccgtccggttcgaggccggccggctcgcccgccaggccgccggt
tcggtcgtcgcgtacctggacgacgagaccatgctgctgtccgccacgaccgcctcgaag
cggccgaaggaccagttcgacttcttccccctgacggtcgacgtcgaggagcggatgtac
gcggcgggccggatccccggctcgttcttccgccgcgagggccgccccggcaccgacgcg
atcctgacctgccgtctcatcgaccggccgctgcgcccgtccttcgtggacggtctccgc
aacgagatccaggtcgtcgtgacggtcatgtcgctcgacccgaaggacccctacgacgtc
gtggcgatcaacgccgcgtcggcgtccacccagctcgcgggcctgcccttctccggcccg
gtcggcggcgtccgcgtcgcgctgatcgcgaacgagaccggcaccgacacccagtgggtg
gccttcccgacgcacgaccagctcgagcgcgccgcgttcgacatggtcgtcgcgggtcgc
gtcgtcggcgacgacgtcgcgatcatgatggtcgaggccgaggccaccgagaagacgatc
gagctcgtcgacggcggcgccaacgccccgaccgaggacgtcgtggccgacggcctggag
gccgcgaagcccttcatccgctcgctgtgcgtcgcgcagcagcagctcgccgacgtcgcg
gccaagccgaccgccgactacccggtgttcccggcctaccagccggacgcgctcgaggcc
gtcaccgaggccgtcgagcaggagctggcgcaggcgctgaccatcgccggcaagcaggag
cgcgagacccgcaccgacgagatcaaggcgtcggtgctggagaagctgggcgagcgcttc
accggccgcgagtccgagctgggcaacgcgttccgcgcgctcaacaagaagctcatccgc
cgccggatcctgaccgaccaggtccggatcgacggccgcggcctgaccgacatccggccg
ctctcggccgaggtcgaggtcatcccgcgggcgcacggctcggcgctgttcgagcgtggc
gagacccagatcctgggtgtcaccacgctgaacatgctgcgcatggagcagacgatcgac
tcgctcggtccggagacctccaagcgctacctgcaccactacaacttcccgccgttctcc
accggtgagaccggccgcgtcgggtcgccgaagcgccgcgagatcggccacggcgccctc
gccgagcgggcgctgctcccggtcctgccggaccgcgaggagttcccctacgcgatccgc
caggtctccgaggcgctgggctccaacgggtccacctcgatgggctcggtctgcgcgtcg
acgatgtcgctgctcaacgccggtgtgccgctgaaggcgccggtcgcgggcatcgcgatg
ggcctggtctccgacgaggtcgacggccagacccgctacgtcgcgctgaccgacatcctc
ggcgccgaggacgcgttcggcgacatggacttcaaggtcgccggcaccaaggacttcgtg
acggcgctgcagctggacaccaagctggacggcatcccgtccgaggtgctggccgccgcc
ctgagccaggccaaggacgcccgcctgaccatcctcgaggtgatcggcgaggccatcgac
ggcccggacgagatgtccaagtacgcgccgcgggtcaccgcggtgaaggtcccggtcgac
aagatcggcgaggtcatcggcccgaagggcaagatgatcaactcgatcaccgagaagacc
ggcgccgacatctcgatcgaggacgacggcacgatctacgtcggtgcgaacgacggcccc
tccgcggaggaggcgatcggcatgatcaacgcgatcgccaacccgcagctgccgaaggtc
ggcgagcggttcctgggcacggtggtcaaggccgccgccttcggtgccttcgtctcgctg
gtccccggcaaggacggtctgatccacatctcgaagctcggcaacgggaagcggatcggc
aaggtcgaggacgtctgcaaggtcggcgacaagatccgcgtcgaggtcaccgacatcgac
aaccgcggcaagatcagcctcgtcccggtccaggagggcggggagaacggtgaggccccg
gcggacgccgagaccggcgccgaggctccggctgaggccgaggccgcgaaccagagctga

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