KEGG   Pseudanabaena sp. ABRG5-3: ABRG53_2888
Entry
ABRG53_2888       CDS       T05820                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pser  Pseudanabaena sp. ABRG5-3
Pathway
pser03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pser00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ABRG53_2888 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pser03021]
    ABRG53_2888 (rpoB)
   03400 DNA repair and recombination proteins [BR:pser03400]
    ABRG53_2888 (rpoB)
Enzymes [BR:pser01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ABRG53_2888 (rpoB)
Transcription machinery [BR:pser03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ABRG53_2888 (rpoB)
DNA repair and recombination proteins [BR:pser03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ABRG53_2888 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DUF5887
Other DBs
NCBI-ProteinID: BBC25145
UniProt: A0A2Z5X0R0
Position
3215111..3218413
AA seq 1100 aa
MNKPTLVTPAFVLPDLVEIQRESFRWFLEEGLIEELESFSPITDYTGKMELHFIAKDYKL
KRPKYSVDESKRRDATYAVQMYVPTRLINKETGEIKEQEVFIGDLPLMTDRGTFIINGAE
RVIVNQIVRSPGVYYKQEIDKNGRRTYNASLIPNRGAWLKFETDKNDLVWVRIDKTRKLS
AQVLLKAIGLSDAEILDALTHREYFQKTIDKEGQFDEDEALKELYRKLRPGEPPTESGGR
ELLRSRFFDPKRYDLGKVGRYKLNKKLRLNTPDTVRVLTEKDILTAINYLINLKFDIGEI
DDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDVDALTPASLVNPKPLVAAI
KEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIE
TPEGPNAGLIGSLATHARVNQYGFIETPYYAVENGKVLKNQEPIYMTADEEDEFRVAPGD
VATNEEGYIFNEIVPIRYRQEWGTASPEEIDYVAVSPVQIISVATSLIPFLEHDDANRAL
MGSNMQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRVTGEVSYVSADEIRVRADDTG
IESIYRLQKYQRSNQDTCLNQRPLVWVGDSVVAGQVLADGSATEGGEIALGQNILVAYMP
WEGYNYEDAILINERLVIDDVYTSIHVEKYEIEARQTKLGPEEITREIPNVGEDSLRNLD
EQGIIRIGAWVSSGEILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKG
RVVDVRVFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPKEDMP
FLPDGTPLDIVLNPLGVPSRMNVGQVFECLLGWAAENLNARFKIVPFDEMYGEEASRELV
HGQLEHARNHTGKDWIFNDGFPGKLTVYDGRTGEPFDQPVTVGKAYMLKLVHLVDDKIHA
RSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYILQELLTVKSDDMTGRNEAL
NAIVKGHAIPRPGTPESFKVLVRELQSLCLDVSVHKLSEDGSNQDTEVDLMVDVGSRRTP
SRPTYESIYRGDINFDEDDD
NT seq 3303 nt   +upstreamnt  +downstreamnt
atgaataagcctactcttgttactcctgccttcgttctaccagatcttgtagaaatccag
cgggagagttttcgatggttcctagaagaaggacttattgaagagcttgagagtttctca
ccgattacagattatacgggcaaaatggaactccatttcattgccaaagattataaactc
aagcgtccaaaatatagtgttgatgagtccaaacgtcgggatgccacctatgccgtacag
atgtacgttcccacgaggcttattaataaagaaacaggagaaataaaagagcaagaagtt
tttattggcgatctgcccctgatgacagatcgtggaacctttattatcaacggcgctgag
cgagtcatcgtcaatcagatcgtccgtagtcctggggtttattacaaacaagaaattgac
aaaaacggtcgtcgcacctacaacgccagcctcattcctaaccgaggcgcatggctgaag
tttgaaactgacaaaaatgatcttgtctgggtgcgtatcgataaaactcgtaaactttcc
gcgcaggtattgctcaaggcgatcggcttaagcgatgccgaaattcttgacgcacttact
caccgtgagtatttccaaaagaccattgataaagaaggtcagtttgacgaagacgaagcc
ctcaaagagctttatcgtaaactgcgtcccggcgaaccgccaacagaatcaggtggtcgc
gaactattgcgatcgcgcttttttgatcctaagcgctatgacctcggcaaagttggacgt
tacaagctcaataagaagttgcgcctcaatacccctgacaccgtgcgggtattaaccgag
aaggatattctcactgcaatcaactacttgatcaacctcaagtttgacatcggcgaaatt
gatgacattgaccacttaggcaaccgtcgcgtgcgttccgttggtgaattgctgcaaaac
caagtccgtgtgggcttaaaccgcctcgaaagaatcattcgtgaacggatgacggtctct
gatgtcgatgccctcacccctgcatccttggttaaccctaagcccctagttgcggcaatc
aaggaattctttggttctagccaactgtcgcagttcatggatcaaaccaatcctctggct
gagttgacccacaaacgccgtcttagcgcccttgggcctggtggtcttacccgcgaacgc
gcaggctttgcggtacgtgatattcacccgagccactatggtcgtatctgccccattgaa
actcctgaaggtcctaacgcagggctgatcggctccttggcaacccacgcccgtgtgaac
cagtacggatttatcgagactccttactatgcagtcgagaacggcaaggtactgaaaaac
caagagccgatttacatgacagcagacgaggaagatgaattccgcgtagctcctggtgac
gtggctaccaatgaagaaggttacatttttaacgaaattgtgccaattcgctatcgtcag
gaatggggtactgcttctcctgaagaaatcgactatgtagcggtttctcccgtacagatc
atctcggtggcaacatcgctgattcctttccttgagcatgatgatgcgaaccgtgcgctg
atgggatcgaacatgcaacgtcaagcagttcctctcttgcgtcctgagcgtcctcttgtt
ggtactggtctggaggcacaggcagcccgtgactcagggatggtgatcgtctcacgagtt
acaggtgaagtctcctatgtttccgccgatgaaattcgcgtcagagccgatgatacgggt
atcgaaagcatctaccgtctgcaaaagtatcagcgatcgaaccaagatacttgcttaaat
caacgtcctctagtttgggttggtgatagtgttgtcgctgggcaagtgctagccgatggt
tccgcaacggaaggtggcgaaatcgcccttggtcagaatattctcgtggcttatatgcct
tgggaaggctacaactacgaagacgcaatcctaattaatgagcgtctagtaattgatgac
gtttacacctcaattcacgttgagaaatacgaaattgaagctcgtcaaaccaagctagga
cctgaagaaatcactcgcgaaattcctaacgtcggtgaagattctctccgtaaccttgat
gaacagggcattatccgcattggtgcttgggtaagttctggtgaaattcttgtcggtaaa
gtgaccccaaagggtgaatccgatcaaccacctgaagaaaagctattaagagcgatcttt
ggtgaaaaggctcgtgatgttagagataactccttgcgtgtacctaacggtgaaaaggga
cgggtcgttgatgtccgcgtatttactcgcgaacaaggcgatgagctgccccctggcgca
aacatggttgtccgtgtttatgttgctcaaaaacgcaaaattcaagtcggcgacaagatg
gcaggtcgtcacgggaacaagggtattatttcgcggattttaccgaaggaagatatgcct
ttcttgcccgatggtactcccctcgacatcgtgttgaatcctctaggtgtgccttcacgg
atgaacgtcggacaggtatttgaatgcttgctcggctgggctgccgaaaacttgaatgct
cgtttcaagatcgtacctttcgatgaaatgtacggcgaagaagcatcccgcgagttggta
catggtcagctagaacatgcccgtaaccatactggtaaggactggatatttaatgatgga
ttccccggtaagttgaccgtctatgacggacgtactggcgaaccattcgatcagccagtg
accgttggtaaggcatatatgctgaaactagttcaccttgtcgatgacaagatccatgcg
cgttctactggtccttactctctggttacacagcagcctcttggcggtaaagcccagcag
ggtggtcagcgcttcggagaaatggaagtatgggcattggaagccttcggggctgcctat
attctccaagaattgctcaccgtcaagtctgacgacatgacgggacgtaacgaagctctg
aatgcgatcgttaagggtcatgcaatccctcgtcctggtacgcctgaatccttcaaggta
ttggtacgcgaacttcagtctctctgtttagatgtgtcagttcacaagctgtcggaagat
ggcagtaaccaagataccgaagttgatttgatggtggatgttggctctcgccgcacccct
agtcgcccaacctacgagtcaatctatcgaggtgacattaactttgacgaagatgatgac
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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