KEGG   Pseudomonas sp. TCU-HL1: THL1_1838
Entry
THL1_1838         CDS       T05373                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
pset  Pseudomonas sp. TCU-HL1
Brite
KEGG Orthology (KO) [BR:pset00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pset03016]
    THL1_1838
Enzymes [BR:pset01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     THL1_1838
Transfer RNA biogenesis [BR:pset03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    THL1_1838
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC RNAseD_HRDC_C
Other DBs
NCBI-ProteinID: AOE84386
UniProt: A0A1B3E4A7
Position
1957227..1958354
AA seq 375 aa
MAIDIIWIRDDASLAKHCADWRRLPFVTLDTEFMRVDTFYPKAGLVQVGDGERAFLIDPL
LIGDWSAFAGLLEDTAVLKVVHACSEDLEVFLRLTGSLPQPLLDTQLAAGYLGIGYSMGY
SRLVQSVLGIDLPKDETRSDWLQRPLTEMQVRYAAEDVQHLAEVYAALAPRLTEPKRAWV
LEDCAELVANLRREIAPEELYREAKLAWKLSRAQLAVLRELCAWREIEARLRDQPRNRIL
REHSLWPLARFQPDNLVSLARIDDMHPRTVRQDGNTLLKLIREAAETPPEHWPETLPEPL
PHEASPLLKKLRAVGQAEAERLGMAPELMLRKKHLEALLKSGYPDGPYSLPEGLRGWRRE
LMGQALLDTLATAGQ
NT seq 1128 nt   +upstreamnt  +downstreamnt
gtggccatcgacattatctggattcgcgacgacgcctcgctggccaaacactgcgccgat
tggcgtcgcctgcccttcgtgaccctggacaccgagttcatgcgggtcgacaccttctat
cccaaggccgggctggtgcaggtcggcgacggcgagcgggctttcctgatcgatccgctg
ctgattggcgactggtccgccttcgccgggctgctggaagacaccgccgtgctcaaggtg
gtgcatgcctgcagcgaagacctggaagtcttcctgcgcctgaccggctcgttgccgcaa
ccgctactggatacccaactggctgccggctacctgggcatcggttactccatggggtac
tcgcgcctggtgcagtcggtgctgggcatcgacctgccgaaggacgaaacccgctccgac
tggctgcagcgcccgctcaccgagatgcaggtgcgctatgccgccgaagacgtccagcac
ctggccgaggtctacgccgccctggcaccgcgcctgaccgagcccaagcgcgcctgggta
ctggaagactgtgccgagctggtggccaacctgcgccgcgagattgcccccgaagagctc
taccgcgaagccaagctggcctggaaactgtcacgcgcccagctcgcggtactgcgagag
ctgtgtgcctggcgcgaaatagaggcacgcctgcgtgaccagccgcgcaaccgcattctc
cgcgagcacagcctctggcccctggcgcgcttccagccggacaatttggtatcgctggcg
agaatcgacgacatgcatccgcgcaccgtgcgtcaggacggcaataccctgcttaaattg
atccgcgaggccgccgagacgccgcccgagcactggcccgagacgctgcccgagccgttg
ccgcacgaggcctcgccgctgctgaagaagctgcgcgcggttggccaggccgaagccgag
cgcctgggaatggccccggaactgatgctgcgcaagaagcacctggaggccctgctgaag
agcggctaccccgatggcccctacagcctgcccgagggcctgcgtggctggcgccgcgag
ttgatgggccaggccctgctggacaccctggccactgccggccaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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